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The next-generation Open Targets Platform: reimagined, redesigned, rebuilt

The Open Targets Platform (https://platform.opentargets.org/) is an open source resource to systematically assist drug target identification and prioritisation using publicly available data. Since our last update, we have reimagined, redesigned, and rebuilt the Platform in order to streamline data i...

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Autores principales: Ochoa, David, Hercules, Andrew, Carmona, Miguel, Suveges, Daniel, Baker, Jarrod, Malangone, Cinzia, Lopez, Irene, Miranda, Alfredo, Cruz-Castillo, Carlos, Fumis, Luca, Bernal-Llinares, Manuel, Tsukanov, Kirill, Cornu, Helena, Tsirigos, Konstantinos, Razuvayevskaya, Olesya, Buniello, Annalisa, Schwartzentruber, Jeremy, Karim, Mohd, Ariano, Bruno, Martinez Osorio, Ricardo Esteban, Ferrer, Javier, Ge, Xiangyu, Machlitt-Northen, Sandra, Gonzalez-Uriarte, Asier, Saha, Shyamasree, Tirunagari, Santosh, Mehta, Chintan, Roldán-Romero, Juan María, Horswell, Stuart, Young, Sarah, Ghoussaini, Maya, Hulcoop, David G, Dunham, Ian, McDonagh, Ellen M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825572/
https://www.ncbi.nlm.nih.gov/pubmed/36399499
http://dx.doi.org/10.1093/nar/gkac1046
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author Ochoa, David
Hercules, Andrew
Carmona, Miguel
Suveges, Daniel
Baker, Jarrod
Malangone, Cinzia
Lopez, Irene
Miranda, Alfredo
Cruz-Castillo, Carlos
Fumis, Luca
Bernal-Llinares, Manuel
Tsukanov, Kirill
Cornu, Helena
Tsirigos, Konstantinos
Razuvayevskaya, Olesya
Buniello, Annalisa
Schwartzentruber, Jeremy
Karim, Mohd
Ariano, Bruno
Martinez Osorio, Ricardo Esteban
Ferrer, Javier
Ge, Xiangyu
Machlitt-Northen, Sandra
Gonzalez-Uriarte, Asier
Saha, Shyamasree
Tirunagari, Santosh
Mehta, Chintan
Roldán-Romero, Juan María
Horswell, Stuart
Young, Sarah
Ghoussaini, Maya
Hulcoop, David G
Dunham, Ian
McDonagh, Ellen M
author_facet Ochoa, David
Hercules, Andrew
Carmona, Miguel
Suveges, Daniel
Baker, Jarrod
Malangone, Cinzia
Lopez, Irene
Miranda, Alfredo
Cruz-Castillo, Carlos
Fumis, Luca
Bernal-Llinares, Manuel
Tsukanov, Kirill
Cornu, Helena
Tsirigos, Konstantinos
Razuvayevskaya, Olesya
Buniello, Annalisa
Schwartzentruber, Jeremy
Karim, Mohd
Ariano, Bruno
Martinez Osorio, Ricardo Esteban
Ferrer, Javier
Ge, Xiangyu
Machlitt-Northen, Sandra
Gonzalez-Uriarte, Asier
Saha, Shyamasree
Tirunagari, Santosh
Mehta, Chintan
Roldán-Romero, Juan María
Horswell, Stuart
Young, Sarah
Ghoussaini, Maya
Hulcoop, David G
Dunham, Ian
McDonagh, Ellen M
author_sort Ochoa, David
collection PubMed
description The Open Targets Platform (https://platform.opentargets.org/) is an open source resource to systematically assist drug target identification and prioritisation using publicly available data. Since our last update, we have reimagined, redesigned, and rebuilt the Platform in order to streamline data integration and harmonisation, expand the ways in which users can explore the data, and improve the user experience. The gene–disease causal evidence has been enhanced and expanded to better capture disease causality across rare, common, and somatic diseases. For target and drug annotations, we have incorporated new features that help assess target safety and tractability, including genetic constraint, PROTACtability assessments, and AlphaFold structure predictions. We have also introduced new machine learning applications for knowledge extraction from the published literature, clinical trial information, and drug labels. The new technologies and frameworks introduced since the last update will ease the introduction of new features and the creation of separate instances of the Platform adapted to user requirements. Our new Community forum, expanded training materials, and outreach programme support our users in a range of use cases.
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spelling pubmed-98255722023-01-10 The next-generation Open Targets Platform: reimagined, redesigned, rebuilt Ochoa, David Hercules, Andrew Carmona, Miguel Suveges, Daniel Baker, Jarrod Malangone, Cinzia Lopez, Irene Miranda, Alfredo Cruz-Castillo, Carlos Fumis, Luca Bernal-Llinares, Manuel Tsukanov, Kirill Cornu, Helena Tsirigos, Konstantinos Razuvayevskaya, Olesya Buniello, Annalisa Schwartzentruber, Jeremy Karim, Mohd Ariano, Bruno Martinez Osorio, Ricardo Esteban Ferrer, Javier Ge, Xiangyu Machlitt-Northen, Sandra Gonzalez-Uriarte, Asier Saha, Shyamasree Tirunagari, Santosh Mehta, Chintan Roldán-Romero, Juan María Horswell, Stuart Young, Sarah Ghoussaini, Maya Hulcoop, David G Dunham, Ian McDonagh, Ellen M Nucleic Acids Res Database Issue The Open Targets Platform (https://platform.opentargets.org/) is an open source resource to systematically assist drug target identification and prioritisation using publicly available data. Since our last update, we have reimagined, redesigned, and rebuilt the Platform in order to streamline data integration and harmonisation, expand the ways in which users can explore the data, and improve the user experience. The gene–disease causal evidence has been enhanced and expanded to better capture disease causality across rare, common, and somatic diseases. For target and drug annotations, we have incorporated new features that help assess target safety and tractability, including genetic constraint, PROTACtability assessments, and AlphaFold structure predictions. We have also introduced new machine learning applications for knowledge extraction from the published literature, clinical trial information, and drug labels. The new technologies and frameworks introduced since the last update will ease the introduction of new features and the creation of separate instances of the Platform adapted to user requirements. Our new Community forum, expanded training materials, and outreach programme support our users in a range of use cases. Oxford University Press 2022-11-18 /pmc/articles/PMC9825572/ /pubmed/36399499 http://dx.doi.org/10.1093/nar/gkac1046 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Ochoa, David
Hercules, Andrew
Carmona, Miguel
Suveges, Daniel
Baker, Jarrod
Malangone, Cinzia
Lopez, Irene
Miranda, Alfredo
Cruz-Castillo, Carlos
Fumis, Luca
Bernal-Llinares, Manuel
Tsukanov, Kirill
Cornu, Helena
Tsirigos, Konstantinos
Razuvayevskaya, Olesya
Buniello, Annalisa
Schwartzentruber, Jeremy
Karim, Mohd
Ariano, Bruno
Martinez Osorio, Ricardo Esteban
Ferrer, Javier
Ge, Xiangyu
Machlitt-Northen, Sandra
Gonzalez-Uriarte, Asier
Saha, Shyamasree
Tirunagari, Santosh
Mehta, Chintan
Roldán-Romero, Juan María
Horswell, Stuart
Young, Sarah
Ghoussaini, Maya
Hulcoop, David G
Dunham, Ian
McDonagh, Ellen M
The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
title The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
title_full The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
title_fullStr The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
title_full_unstemmed The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
title_short The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
title_sort next-generation open targets platform: reimagined, redesigned, rebuilt
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825572/
https://www.ncbi.nlm.nih.gov/pubmed/36399499
http://dx.doi.org/10.1093/nar/gkac1046
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