Cargando…
The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
The Open Targets Platform (https://platform.opentargets.org/) is an open source resource to systematically assist drug target identification and prioritisation using publicly available data. Since our last update, we have reimagined, redesigned, and rebuilt the Platform in order to streamline data i...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825572/ https://www.ncbi.nlm.nih.gov/pubmed/36399499 http://dx.doi.org/10.1093/nar/gkac1046 |
_version_ | 1784866662297632768 |
---|---|
author | Ochoa, David Hercules, Andrew Carmona, Miguel Suveges, Daniel Baker, Jarrod Malangone, Cinzia Lopez, Irene Miranda, Alfredo Cruz-Castillo, Carlos Fumis, Luca Bernal-Llinares, Manuel Tsukanov, Kirill Cornu, Helena Tsirigos, Konstantinos Razuvayevskaya, Olesya Buniello, Annalisa Schwartzentruber, Jeremy Karim, Mohd Ariano, Bruno Martinez Osorio, Ricardo Esteban Ferrer, Javier Ge, Xiangyu Machlitt-Northen, Sandra Gonzalez-Uriarte, Asier Saha, Shyamasree Tirunagari, Santosh Mehta, Chintan Roldán-Romero, Juan María Horswell, Stuart Young, Sarah Ghoussaini, Maya Hulcoop, David G Dunham, Ian McDonagh, Ellen M |
author_facet | Ochoa, David Hercules, Andrew Carmona, Miguel Suveges, Daniel Baker, Jarrod Malangone, Cinzia Lopez, Irene Miranda, Alfredo Cruz-Castillo, Carlos Fumis, Luca Bernal-Llinares, Manuel Tsukanov, Kirill Cornu, Helena Tsirigos, Konstantinos Razuvayevskaya, Olesya Buniello, Annalisa Schwartzentruber, Jeremy Karim, Mohd Ariano, Bruno Martinez Osorio, Ricardo Esteban Ferrer, Javier Ge, Xiangyu Machlitt-Northen, Sandra Gonzalez-Uriarte, Asier Saha, Shyamasree Tirunagari, Santosh Mehta, Chintan Roldán-Romero, Juan María Horswell, Stuart Young, Sarah Ghoussaini, Maya Hulcoop, David G Dunham, Ian McDonagh, Ellen M |
author_sort | Ochoa, David |
collection | PubMed |
description | The Open Targets Platform (https://platform.opentargets.org/) is an open source resource to systematically assist drug target identification and prioritisation using publicly available data. Since our last update, we have reimagined, redesigned, and rebuilt the Platform in order to streamline data integration and harmonisation, expand the ways in which users can explore the data, and improve the user experience. The gene–disease causal evidence has been enhanced and expanded to better capture disease causality across rare, common, and somatic diseases. For target and drug annotations, we have incorporated new features that help assess target safety and tractability, including genetic constraint, PROTACtability assessments, and AlphaFold structure predictions. We have also introduced new machine learning applications for knowledge extraction from the published literature, clinical trial information, and drug labels. The new technologies and frameworks introduced since the last update will ease the introduction of new features and the creation of separate instances of the Platform adapted to user requirements. Our new Community forum, expanded training materials, and outreach programme support our users in a range of use cases. |
format | Online Article Text |
id | pubmed-9825572 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-98255722023-01-10 The next-generation Open Targets Platform: reimagined, redesigned, rebuilt Ochoa, David Hercules, Andrew Carmona, Miguel Suveges, Daniel Baker, Jarrod Malangone, Cinzia Lopez, Irene Miranda, Alfredo Cruz-Castillo, Carlos Fumis, Luca Bernal-Llinares, Manuel Tsukanov, Kirill Cornu, Helena Tsirigos, Konstantinos Razuvayevskaya, Olesya Buniello, Annalisa Schwartzentruber, Jeremy Karim, Mohd Ariano, Bruno Martinez Osorio, Ricardo Esteban Ferrer, Javier Ge, Xiangyu Machlitt-Northen, Sandra Gonzalez-Uriarte, Asier Saha, Shyamasree Tirunagari, Santosh Mehta, Chintan Roldán-Romero, Juan María Horswell, Stuart Young, Sarah Ghoussaini, Maya Hulcoop, David G Dunham, Ian McDonagh, Ellen M Nucleic Acids Res Database Issue The Open Targets Platform (https://platform.opentargets.org/) is an open source resource to systematically assist drug target identification and prioritisation using publicly available data. Since our last update, we have reimagined, redesigned, and rebuilt the Platform in order to streamline data integration and harmonisation, expand the ways in which users can explore the data, and improve the user experience. The gene–disease causal evidence has been enhanced and expanded to better capture disease causality across rare, common, and somatic diseases. For target and drug annotations, we have incorporated new features that help assess target safety and tractability, including genetic constraint, PROTACtability assessments, and AlphaFold structure predictions. We have also introduced new machine learning applications for knowledge extraction from the published literature, clinical trial information, and drug labels. The new technologies and frameworks introduced since the last update will ease the introduction of new features and the creation of separate instances of the Platform adapted to user requirements. Our new Community forum, expanded training materials, and outreach programme support our users in a range of use cases. Oxford University Press 2022-11-18 /pmc/articles/PMC9825572/ /pubmed/36399499 http://dx.doi.org/10.1093/nar/gkac1046 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Ochoa, David Hercules, Andrew Carmona, Miguel Suveges, Daniel Baker, Jarrod Malangone, Cinzia Lopez, Irene Miranda, Alfredo Cruz-Castillo, Carlos Fumis, Luca Bernal-Llinares, Manuel Tsukanov, Kirill Cornu, Helena Tsirigos, Konstantinos Razuvayevskaya, Olesya Buniello, Annalisa Schwartzentruber, Jeremy Karim, Mohd Ariano, Bruno Martinez Osorio, Ricardo Esteban Ferrer, Javier Ge, Xiangyu Machlitt-Northen, Sandra Gonzalez-Uriarte, Asier Saha, Shyamasree Tirunagari, Santosh Mehta, Chintan Roldán-Romero, Juan María Horswell, Stuart Young, Sarah Ghoussaini, Maya Hulcoop, David G Dunham, Ian McDonagh, Ellen M The next-generation Open Targets Platform: reimagined, redesigned, rebuilt |
title | The next-generation Open Targets Platform: reimagined, redesigned, rebuilt |
title_full | The next-generation Open Targets Platform: reimagined, redesigned, rebuilt |
title_fullStr | The next-generation Open Targets Platform: reimagined, redesigned, rebuilt |
title_full_unstemmed | The next-generation Open Targets Platform: reimagined, redesigned, rebuilt |
title_short | The next-generation Open Targets Platform: reimagined, redesigned, rebuilt |
title_sort | next-generation open targets platform: reimagined, redesigned, rebuilt |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825572/ https://www.ncbi.nlm.nih.gov/pubmed/36399499 http://dx.doi.org/10.1093/nar/gkac1046 |
work_keys_str_mv | AT ochoadavid thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT herculesandrew thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT carmonamiguel thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT suvegesdaniel thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT bakerjarrod thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT malangonecinzia thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT lopezirene thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT mirandaalfredo thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT cruzcastillocarlos thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT fumisluca thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT bernalllinaresmanuel thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT tsukanovkirill thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT cornuhelena thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT tsirigoskonstantinos thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT razuvayevskayaolesya thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT bunielloannalisa thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT schwartzentruberjeremy thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT karimmohd thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT arianobruno thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT martinezosorioricardoesteban thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT ferrerjavier thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT gexiangyu thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT machlittnorthensandra thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT gonzalezuriarteasier thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT sahashyamasree thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT tirunagarisantosh thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT mehtachintan thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT roldanromerojuanmaria thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT horswellstuart thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT youngsarah thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT ghoussainimaya thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT hulcoopdavidg thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT dunhamian thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT mcdonaghellenm thenextgenerationopentargetsplatformreimaginedredesignedrebuilt AT ochoadavid nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT herculesandrew nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT carmonamiguel nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT suvegesdaniel nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT bakerjarrod nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT malangonecinzia nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT lopezirene nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT mirandaalfredo nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT cruzcastillocarlos nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT fumisluca nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT bernalllinaresmanuel nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT tsukanovkirill nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT cornuhelena nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT tsirigoskonstantinos nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT razuvayevskayaolesya nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT bunielloannalisa nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT schwartzentruberjeremy nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT karimmohd nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT arianobruno nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT martinezosorioricardoesteban nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT ferrerjavier nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT gexiangyu nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT machlittnorthensandra nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT gonzalezuriarteasier nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT sahashyamasree nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT tirunagarisantosh nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT mehtachintan nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT roldanromerojuanmaria nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT horswellstuart nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT youngsarah nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT ghoussainimaya nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT hulcoopdavidg nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT dunhamian nextgenerationopentargetsplatformreimaginedredesignedrebuilt AT mcdonaghellenm nextgenerationopentargetsplatformreimaginedredesignedrebuilt |