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Pharos 2023: an integrated resource for the understudied human proteome
The Illuminating the Druggable Genome (IDG) project aims to improve our understanding of understudied proteins and our ability to study them in the context of disease biology by perturbing them with small molecules, biologics, or other therapeutic modalities. Two main products from the IDG effort ar...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825581/ https://www.ncbi.nlm.nih.gov/pubmed/36624666 http://dx.doi.org/10.1093/nar/gkac1033 |
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author | Kelleher, Keith J Sheils, Timothy K Mathias, Stephen L Yang, Jeremy J Metzger, Vincent T Siramshetty, Vishal B Nguyen, Dac-Trung Jensen, Lars Juhl Vidović, Dušica Schürer, Stephan C Holmes, Jayme Sharma, Karlie R Pillai, Ajay Bologa, Cristian G Edwards, Jeremy S Mathé, Ewy A Oprea, Tudor I |
author_facet | Kelleher, Keith J Sheils, Timothy K Mathias, Stephen L Yang, Jeremy J Metzger, Vincent T Siramshetty, Vishal B Nguyen, Dac-Trung Jensen, Lars Juhl Vidović, Dušica Schürer, Stephan C Holmes, Jayme Sharma, Karlie R Pillai, Ajay Bologa, Cristian G Edwards, Jeremy S Mathé, Ewy A Oprea, Tudor I |
author_sort | Kelleher, Keith J |
collection | PubMed |
description | The Illuminating the Druggable Genome (IDG) project aims to improve our understanding of understudied proteins and our ability to study them in the context of disease biology by perturbing them with small molecules, biologics, or other therapeutic modalities. Two main products from the IDG effort are the Target Central Resource Database (TCRD) (http://juniper.health.unm.edu/tcrd/), which curates and aggregates information, and Pharos (https://pharos.nih.gov/), a web interface for users to extract and visualize data from TCRD. Since the 2021 release, TCRD/Pharos has focused on developing visualization and analysis tools that help reveal higher-level patterns in the underlying data. The current iterations of TCRD and Pharos enable users to perform enrichment calculations based on subsets of targets, diseases, or ligands and to create interactive heat maps and UpSet charts of many types of annotations. Using several examples, we show how to address disease biology and drug discovery questions through enrichment calculations and UpSet charts. |
format | Online Article Text |
id | pubmed-9825581 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-98255812023-01-10 Pharos 2023: an integrated resource for the understudied human proteome Kelleher, Keith J Sheils, Timothy K Mathias, Stephen L Yang, Jeremy J Metzger, Vincent T Siramshetty, Vishal B Nguyen, Dac-Trung Jensen, Lars Juhl Vidović, Dušica Schürer, Stephan C Holmes, Jayme Sharma, Karlie R Pillai, Ajay Bologa, Cristian G Edwards, Jeremy S Mathé, Ewy A Oprea, Tudor I Nucleic Acids Res Database Issue The Illuminating the Druggable Genome (IDG) project aims to improve our understanding of understudied proteins and our ability to study them in the context of disease biology by perturbing them with small molecules, biologics, or other therapeutic modalities. Two main products from the IDG effort are the Target Central Resource Database (TCRD) (http://juniper.health.unm.edu/tcrd/), which curates and aggregates information, and Pharos (https://pharos.nih.gov/), a web interface for users to extract and visualize data from TCRD. Since the 2021 release, TCRD/Pharos has focused on developing visualization and analysis tools that help reveal higher-level patterns in the underlying data. The current iterations of TCRD and Pharos enable users to perform enrichment calculations based on subsets of targets, diseases, or ligands and to create interactive heat maps and UpSet charts of many types of annotations. Using several examples, we show how to address disease biology and drug discovery questions through enrichment calculations and UpSet charts. Oxford University Press 2022-11-29 /pmc/articles/PMC9825581/ /pubmed/36624666 http://dx.doi.org/10.1093/nar/gkac1033 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Kelleher, Keith J Sheils, Timothy K Mathias, Stephen L Yang, Jeremy J Metzger, Vincent T Siramshetty, Vishal B Nguyen, Dac-Trung Jensen, Lars Juhl Vidović, Dušica Schürer, Stephan C Holmes, Jayme Sharma, Karlie R Pillai, Ajay Bologa, Cristian G Edwards, Jeremy S Mathé, Ewy A Oprea, Tudor I Pharos 2023: an integrated resource for the understudied human proteome |
title | Pharos 2023: an integrated resource for the understudied human proteome |
title_full | Pharos 2023: an integrated resource for the understudied human proteome |
title_fullStr | Pharos 2023: an integrated resource for the understudied human proteome |
title_full_unstemmed | Pharos 2023: an integrated resource for the understudied human proteome |
title_short | Pharos 2023: an integrated resource for the understudied human proteome |
title_sort | pharos 2023: an integrated resource for the understudied human proteome |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825581/ https://www.ncbi.nlm.nih.gov/pubmed/36624666 http://dx.doi.org/10.1093/nar/gkac1033 |
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