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Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy
Fungal taxonomy is a complex and rapidly changing subject, which makes proper naming of fungi challenging for taxonomists. A registration platform with a standardized and information-integrated database is a powerful tool for efficient research on fungal taxonomy. Fungal Names (FN, https://nmdc.cn/f...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825588/ https://www.ncbi.nlm.nih.gov/pubmed/36271801 http://dx.doi.org/10.1093/nar/gkac926 |
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author | Wang, Fang Wang, Ke Cai, Lei Zhao, Mingjun Kirk, Paul M Fan, Guomei Sun, Qinglan Li, Bo Wang, Shuai Yu, Zhengfei Han, Dong Ma, Juncai Wu, Linhuan Yao, Yijian |
author_facet | Wang, Fang Wang, Ke Cai, Lei Zhao, Mingjun Kirk, Paul M Fan, Guomei Sun, Qinglan Li, Bo Wang, Shuai Yu, Zhengfei Han, Dong Ma, Juncai Wu, Linhuan Yao, Yijian |
author_sort | Wang, Fang |
collection | PubMed |
description | Fungal taxonomy is a complex and rapidly changing subject, which makes proper naming of fungi challenging for taxonomists. A registration platform with a standardized and information-integrated database is a powerful tool for efficient research on fungal taxonomy. Fungal Names (FN, https://nmdc.cn/fungalnames/; launched in 2011) is one of the three official fungal nomenclatural repositories authorized by the International Nomenclature Committee for Fungi (NCF). Currently, FN includes >567 000 taxon names from >10 000 related journals and books published since 1596 and covers >147 000 collection records of type specimens/illustrations from >5000 preserving agencies. FN is also a knowledge base that integrates nomenclature information with specimens, culture collections and herbaria/fungaria, publications and taxonomists, and represents a summary of the history and recent advances in fungal taxonomy. Published fungal names are categorized based on well-accepted nomenclature rules and can be readily searched with different keywords and strategies. In combination with a standardized name checking tool and a sequence alignment-based identification package, FN makes the registration and typification of nomenclatural novelties of fungi convenient and accurate. |
format | Online Article Text |
id | pubmed-9825588 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-98255882023-01-10 Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy Wang, Fang Wang, Ke Cai, Lei Zhao, Mingjun Kirk, Paul M Fan, Guomei Sun, Qinglan Li, Bo Wang, Shuai Yu, Zhengfei Han, Dong Ma, Juncai Wu, Linhuan Yao, Yijian Nucleic Acids Res Database Issue Fungal taxonomy is a complex and rapidly changing subject, which makes proper naming of fungi challenging for taxonomists. A registration platform with a standardized and information-integrated database is a powerful tool for efficient research on fungal taxonomy. Fungal Names (FN, https://nmdc.cn/fungalnames/; launched in 2011) is one of the three official fungal nomenclatural repositories authorized by the International Nomenclature Committee for Fungi (NCF). Currently, FN includes >567 000 taxon names from >10 000 related journals and books published since 1596 and covers >147 000 collection records of type specimens/illustrations from >5000 preserving agencies. FN is also a knowledge base that integrates nomenclature information with specimens, culture collections and herbaria/fungaria, publications and taxonomists, and represents a summary of the history and recent advances in fungal taxonomy. Published fungal names are categorized based on well-accepted nomenclature rules and can be readily searched with different keywords and strategies. In combination with a standardized name checking tool and a sequence alignment-based identification package, FN makes the registration and typification of nomenclatural novelties of fungi convenient and accurate. Oxford University Press 2022-10-22 /pmc/articles/PMC9825588/ /pubmed/36271801 http://dx.doi.org/10.1093/nar/gkac926 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Wang, Fang Wang, Ke Cai, Lei Zhao, Mingjun Kirk, Paul M Fan, Guomei Sun, Qinglan Li, Bo Wang, Shuai Yu, Zhengfei Han, Dong Ma, Juncai Wu, Linhuan Yao, Yijian Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy |
title | Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy |
title_full | Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy |
title_fullStr | Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy |
title_full_unstemmed | Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy |
title_short | Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy |
title_sort | fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825588/ https://www.ncbi.nlm.nih.gov/pubmed/36271801 http://dx.doi.org/10.1093/nar/gkac926 |
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