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PDCM Finder: an open global research platform for patient-derived cancer models

PDCM Finder (www.cancermodels.org) is a cancer research platform that aggregates clinical, genomic and functional data from patient-derived xenografts, organoids and cell lines. It was launched in April 2022 as a successor of the PDX Finder portal, which focused solely on patient-derived xenograft m...

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Autores principales: Perova, Zinaida, Martinez, Mauricio, Mandloi, Tushar, Gomez, Federico Lopez, Halmagyi, Csaba, Follette, Alex, Mason, Jeremy, Newhauser, Steven, Begley, Dale A, Krupke, Debra M, Bult, Carol, Parkinson, Helen, Groza, Tudor
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825610/
https://www.ncbi.nlm.nih.gov/pubmed/36399494
http://dx.doi.org/10.1093/nar/gkac1021
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author Perova, Zinaida
Martinez, Mauricio
Mandloi, Tushar
Gomez, Federico Lopez
Halmagyi, Csaba
Follette, Alex
Mason, Jeremy
Newhauser, Steven
Begley, Dale A
Krupke, Debra M
Bult, Carol
Parkinson, Helen
Groza, Tudor
author_facet Perova, Zinaida
Martinez, Mauricio
Mandloi, Tushar
Gomez, Federico Lopez
Halmagyi, Csaba
Follette, Alex
Mason, Jeremy
Newhauser, Steven
Begley, Dale A
Krupke, Debra M
Bult, Carol
Parkinson, Helen
Groza, Tudor
author_sort Perova, Zinaida
collection PubMed
description PDCM Finder (www.cancermodels.org) is a cancer research platform that aggregates clinical, genomic and functional data from patient-derived xenografts, organoids and cell lines. It was launched in April 2022 as a successor of the PDX Finder portal, which focused solely on patient-derived xenograft models. Currently the portal has over 6200 models across 13 cancer types, including rare paediatric models (17%) and models from minority ethnic backgrounds (33%), making it the largest free to consumer and open access resource of this kind. The PDCM Finder standardises, harmonises and integrates the complex and diverse data associated with PDCMs for the cancer community and displays over 90 million data points across a variety of data types (clinical metadata, molecular and treatment-based). PDCM data is FAIR and underpins the generation and testing of new hypotheses in cancer mechanisms and personalised medicine development.
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spelling pubmed-98256102023-01-10 PDCM Finder: an open global research platform for patient-derived cancer models Perova, Zinaida Martinez, Mauricio Mandloi, Tushar Gomez, Federico Lopez Halmagyi, Csaba Follette, Alex Mason, Jeremy Newhauser, Steven Begley, Dale A Krupke, Debra M Bult, Carol Parkinson, Helen Groza, Tudor Nucleic Acids Res Database Issue PDCM Finder (www.cancermodels.org) is a cancer research platform that aggregates clinical, genomic and functional data from patient-derived xenografts, organoids and cell lines. It was launched in April 2022 as a successor of the PDX Finder portal, which focused solely on patient-derived xenograft models. Currently the portal has over 6200 models across 13 cancer types, including rare paediatric models (17%) and models from minority ethnic backgrounds (33%), making it the largest free to consumer and open access resource of this kind. The PDCM Finder standardises, harmonises and integrates the complex and diverse data associated with PDCMs for the cancer community and displays over 90 million data points across a variety of data types (clinical metadata, molecular and treatment-based). PDCM data is FAIR and underpins the generation and testing of new hypotheses in cancer mechanisms and personalised medicine development. Oxford University Press 2022-11-18 /pmc/articles/PMC9825610/ /pubmed/36399494 http://dx.doi.org/10.1093/nar/gkac1021 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Perova, Zinaida
Martinez, Mauricio
Mandloi, Tushar
Gomez, Federico Lopez
Halmagyi, Csaba
Follette, Alex
Mason, Jeremy
Newhauser, Steven
Begley, Dale A
Krupke, Debra M
Bult, Carol
Parkinson, Helen
Groza, Tudor
PDCM Finder: an open global research platform for patient-derived cancer models
title PDCM Finder: an open global research platform for patient-derived cancer models
title_full PDCM Finder: an open global research platform for patient-derived cancer models
title_fullStr PDCM Finder: an open global research platform for patient-derived cancer models
title_full_unstemmed PDCM Finder: an open global research platform for patient-derived cancer models
title_short PDCM Finder: an open global research platform for patient-derived cancer models
title_sort pdcm finder: an open global research platform for patient-derived cancer models
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825610/
https://www.ncbi.nlm.nih.gov/pubmed/36399494
http://dx.doi.org/10.1093/nar/gkac1021
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