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Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis

BACKGROUND: To explore the transcriptome profiling of the fourth-stage larvae of Angiostrongylus cantonensis. METHODS: Two groups of fourth-stage larvae were collected to extract total RNA in Zhejiang, China 2020. Then, mRNA was separated and reverse transcribed into cDNA. Next-generation sequencing...

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Autores principales: Guo, Yue, Zhang, Hui, Dong, Haiyan, Lu, Ming Ke, Li, Xiaoyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Tehran University of Medical Sciences 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825694/
https://www.ncbi.nlm.nih.gov/pubmed/36694564
http://dx.doi.org/10.18502/ijpa.v17i4.11287
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author Guo, Yue
Zhang, Hui
Dong, Haiyan
Lu, Ming Ke
Li, Xiaoyu
author_facet Guo, Yue
Zhang, Hui
Dong, Haiyan
Lu, Ming Ke
Li, Xiaoyu
author_sort Guo, Yue
collection PubMed
description BACKGROUND: To explore the transcriptome profiling of the fourth-stage larvae of Angiostrongylus cantonensis. METHODS: Two groups of fourth-stage larvae were collected to extract total RNA in Zhejiang, China 2020. Then, mRNA was separated and reverse transcribed into cDNA. Next-generation sequencing was used to explore the transcriptome information. Finally, to obtain the biological annotation information, the transcriptome information was run against the related databases, including Nr, GO, COG, KOG and ORF. RESULTS: Overall, 128667 unigenes and 193059 transcripts were obtained. The Nr annotations of unigenes and transcripts showed that A. cantonensis was the 5th and 4th most related species, respectively. Meanwhile, the annotation of unigenes and transcripts by querying GO, COG, KOG and ORF showed that L4 was extremely active in gene expression, concerning signal transduction, transcription, posttranslational modification, metabolism, etc. CONCLUSION: The fourth-stage larvae of A. cantonensis have their own profiling in the transcriptome, which is related to signal transduction, transcription, posttranslational modification, metabolism, etc.
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spelling pubmed-98256942023-01-23 Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis Guo, Yue Zhang, Hui Dong, Haiyan Lu, Ming Ke Li, Xiaoyu Iran J Parasitol Short Communication BACKGROUND: To explore the transcriptome profiling of the fourth-stage larvae of Angiostrongylus cantonensis. METHODS: Two groups of fourth-stage larvae were collected to extract total RNA in Zhejiang, China 2020. Then, mRNA was separated and reverse transcribed into cDNA. Next-generation sequencing was used to explore the transcriptome information. Finally, to obtain the biological annotation information, the transcriptome information was run against the related databases, including Nr, GO, COG, KOG and ORF. RESULTS: Overall, 128667 unigenes and 193059 transcripts were obtained. The Nr annotations of unigenes and transcripts showed that A. cantonensis was the 5th and 4th most related species, respectively. Meanwhile, the annotation of unigenes and transcripts by querying GO, COG, KOG and ORF showed that L4 was extremely active in gene expression, concerning signal transduction, transcription, posttranslational modification, metabolism, etc. CONCLUSION: The fourth-stage larvae of A. cantonensis have their own profiling in the transcriptome, which is related to signal transduction, transcription, posttranslational modification, metabolism, etc. Tehran University of Medical Sciences 2022 /pmc/articles/PMC9825694/ /pubmed/36694564 http://dx.doi.org/10.18502/ijpa.v17i4.11287 Text en Copyright © 2022 Guo et al. Published by Tehran University of Medical Sciences https://creativecommons.org/licenses/by-nc/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International license (https://creativecommons.org/licenses/by-nc/4.0/). Non-commercial uses of the work are permitted, provided the original work is properly cited.
spellingShingle Short Communication
Guo, Yue
Zhang, Hui
Dong, Haiyan
Lu, Ming Ke
Li, Xiaoyu
Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis
title Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis
title_full Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis
title_fullStr Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis
title_full_unstemmed Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis
title_short Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis
title_sort transcriptome profiling and bioinformatic analysis of the fourth-stage larvae of angiostrongylus cantonensis
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825694/
https://www.ncbi.nlm.nih.gov/pubmed/36694564
http://dx.doi.org/10.18502/ijpa.v17i4.11287
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