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Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis
BACKGROUND: To explore the transcriptome profiling of the fourth-stage larvae of Angiostrongylus cantonensis. METHODS: Two groups of fourth-stage larvae were collected to extract total RNA in Zhejiang, China 2020. Then, mRNA was separated and reverse transcribed into cDNA. Next-generation sequencing...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Tehran University of Medical Sciences
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825694/ https://www.ncbi.nlm.nih.gov/pubmed/36694564 http://dx.doi.org/10.18502/ijpa.v17i4.11287 |
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author | Guo, Yue Zhang, Hui Dong, Haiyan Lu, Ming Ke Li, Xiaoyu |
author_facet | Guo, Yue Zhang, Hui Dong, Haiyan Lu, Ming Ke Li, Xiaoyu |
author_sort | Guo, Yue |
collection | PubMed |
description | BACKGROUND: To explore the transcriptome profiling of the fourth-stage larvae of Angiostrongylus cantonensis. METHODS: Two groups of fourth-stage larvae were collected to extract total RNA in Zhejiang, China 2020. Then, mRNA was separated and reverse transcribed into cDNA. Next-generation sequencing was used to explore the transcriptome information. Finally, to obtain the biological annotation information, the transcriptome information was run against the related databases, including Nr, GO, COG, KOG and ORF. RESULTS: Overall, 128667 unigenes and 193059 transcripts were obtained. The Nr annotations of unigenes and transcripts showed that A. cantonensis was the 5th and 4th most related species, respectively. Meanwhile, the annotation of unigenes and transcripts by querying GO, COG, KOG and ORF showed that L4 was extremely active in gene expression, concerning signal transduction, transcription, posttranslational modification, metabolism, etc. CONCLUSION: The fourth-stage larvae of A. cantonensis have their own profiling in the transcriptome, which is related to signal transduction, transcription, posttranslational modification, metabolism, etc. |
format | Online Article Text |
id | pubmed-9825694 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Tehran University of Medical Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-98256942023-01-23 Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis Guo, Yue Zhang, Hui Dong, Haiyan Lu, Ming Ke Li, Xiaoyu Iran J Parasitol Short Communication BACKGROUND: To explore the transcriptome profiling of the fourth-stage larvae of Angiostrongylus cantonensis. METHODS: Two groups of fourth-stage larvae were collected to extract total RNA in Zhejiang, China 2020. Then, mRNA was separated and reverse transcribed into cDNA. Next-generation sequencing was used to explore the transcriptome information. Finally, to obtain the biological annotation information, the transcriptome information was run against the related databases, including Nr, GO, COG, KOG and ORF. RESULTS: Overall, 128667 unigenes and 193059 transcripts were obtained. The Nr annotations of unigenes and transcripts showed that A. cantonensis was the 5th and 4th most related species, respectively. Meanwhile, the annotation of unigenes and transcripts by querying GO, COG, KOG and ORF showed that L4 was extremely active in gene expression, concerning signal transduction, transcription, posttranslational modification, metabolism, etc. CONCLUSION: The fourth-stage larvae of A. cantonensis have their own profiling in the transcriptome, which is related to signal transduction, transcription, posttranslational modification, metabolism, etc. Tehran University of Medical Sciences 2022 /pmc/articles/PMC9825694/ /pubmed/36694564 http://dx.doi.org/10.18502/ijpa.v17i4.11287 Text en Copyright © 2022 Guo et al. Published by Tehran University of Medical Sciences https://creativecommons.org/licenses/by-nc/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International license (https://creativecommons.org/licenses/by-nc/4.0/). Non-commercial uses of the work are permitted, provided the original work is properly cited. |
spellingShingle | Short Communication Guo, Yue Zhang, Hui Dong, Haiyan Lu, Ming Ke Li, Xiaoyu Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis |
title | Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis |
title_full | Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis |
title_fullStr | Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis |
title_full_unstemmed | Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis |
title_short | Transcriptome Profiling and Bioinformatic Analysis of the Fourth-Stage Larvae of Angiostrongylus cantonensis |
title_sort | transcriptome profiling and bioinformatic analysis of the fourth-stage larvae of angiostrongylus cantonensis |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825694/ https://www.ncbi.nlm.nih.gov/pubmed/36694564 http://dx.doi.org/10.18502/ijpa.v17i4.11287 |
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