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The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection

The 2023 Nucleic Acids Research Database Issue contains 178 papers ranging across biology and related fields. There are 90 papers reporting on new databases and 82 updates from resources previously published in the Issue. Six more papers are updates from databases most recently published elsewhere....

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Autores principales: Rigden, Daniel J, Fernández, Xosé M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825711/
https://www.ncbi.nlm.nih.gov/pubmed/36624667
http://dx.doi.org/10.1093/nar/gkac1186
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author Rigden, Daniel J
Fernández, Xosé M
author_facet Rigden, Daniel J
Fernández, Xosé M
author_sort Rigden, Daniel J
collection PubMed
description The 2023 Nucleic Acids Research Database Issue contains 178 papers ranging across biology and related fields. There are 90 papers reporting on new databases and 82 updates from resources previously published in the Issue. Six more papers are updates from databases most recently published elsewhere. Major nucleic acid databases reporting updates include Genbank, ENA, ChIPBase, JASPAR, mirDIP and the Issue's first Breakthrough Article, NACDDB for Circular Dichroism data. Updates from BMRB and RCSB cover experimental protein structural data while AlphaFold 2 computational structure predictions feature widely. STRING and REBASE are stand-out updates in the signalling and enzymes section. Immunology-related databases include CEDAR, the second Breakthrough Article, for cancer epitopes and receptors alongside returning IPD-IMGT/HLA and the new PGG.MHC. Genomics-related resources include Ensembl, GWAS Central and UCSC Genome Browser. Major returning databases for drugs and their targets include Open Targets, DrugCentral, CTD and Pubchem. The EMPIAR image archive appears in the Issue for the first time. The entire database Issue is freely available online on the Nucleic Acids Research website (https://academic.oup.com/nar). The NAR online Molecular Biology Database Collection has been updated, revisiting 463 entries, adding 92 new resources and eliminating 96 discontinued URLs so bringing the current total to 1764 databases. It is available at http://www.oxfordjournals.org/nar/database/c/.
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spelling pubmed-98257112023-01-10 The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection Rigden, Daniel J Fernández, Xosé M Nucleic Acids Res Editorial The 2023 Nucleic Acids Research Database Issue contains 178 papers ranging across biology and related fields. There are 90 papers reporting on new databases and 82 updates from resources previously published in the Issue. Six more papers are updates from databases most recently published elsewhere. Major nucleic acid databases reporting updates include Genbank, ENA, ChIPBase, JASPAR, mirDIP and the Issue's first Breakthrough Article, NACDDB for Circular Dichroism data. Updates from BMRB and RCSB cover experimental protein structural data while AlphaFold 2 computational structure predictions feature widely. STRING and REBASE are stand-out updates in the signalling and enzymes section. Immunology-related databases include CEDAR, the second Breakthrough Article, for cancer epitopes and receptors alongside returning IPD-IMGT/HLA and the new PGG.MHC. Genomics-related resources include Ensembl, GWAS Central and UCSC Genome Browser. Major returning databases for drugs and their targets include Open Targets, DrugCentral, CTD and Pubchem. The EMPIAR image archive appears in the Issue for the first time. The entire database Issue is freely available online on the Nucleic Acids Research website (https://academic.oup.com/nar). The NAR online Molecular Biology Database Collection has been updated, revisiting 463 entries, adding 92 new resources and eliminating 96 discontinued URLs so bringing the current total to 1764 databases. It is available at http://www.oxfordjournals.org/nar/database/c/. Oxford University Press 2023-01-06 /pmc/articles/PMC9825711/ /pubmed/36624667 http://dx.doi.org/10.1093/nar/gkac1186 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Editorial
Rigden, Daniel J
Fernández, Xosé M
The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection
title The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection
title_full The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection
title_fullStr The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection
title_full_unstemmed The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection
title_short The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection
title_sort 2023 nucleic acids research database issue and the online molecular biology database collection
topic Editorial
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825711/
https://www.ncbi.nlm.nih.gov/pubmed/36624667
http://dx.doi.org/10.1093/nar/gkac1186
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