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Pseudoalignment tools as an efficient alternative to detect repeated transposable elements in scRNAseq data

MOTIVATION: Transposable elements (TE) have played a major role in configuring the structures of mammalian genomes through evolution. In normal conditions, the expression of these elements is repressed by different epigenetic regulation mechanisms such as DNA methylation, histone modification and re...

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Detalles Bibliográficos
Autores principales:	de Villarreal, Jaime Martínez, Kalisz, Mark, Piedrafita, Gabriel, Graña-Castro, Osvaldo, Chondronasiou, Dafni, Serrano, Manuel, Real, Francisco X
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2022
Materias:	Applications Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825736/ https://www.ncbi.nlm.nih.gov/pubmed/36519825 http://dx.doi.org/10.1093/bioinformatics/btac737

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