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Common and rare variants in patients with early onset drusen maculopathy
Early onset drusen maculopathy (EODM) can lead to advanced macular degeneration at a young age, affecting quality of life. However, the genetic causes of EODM are not well studied. We performed whole genome sequencing in 49 EODM patients. Common genetic variants were analysed by calculating genetic...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Blackwell Publishing Ltd
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825904/ https://www.ncbi.nlm.nih.gov/pubmed/36053979 http://dx.doi.org/10.1111/cge.14212 |
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author | de Breuk, Anita Lechanteur, Yara T. E. Astuti, Galuh Galbany, Jordi Corominas Klaver, Caroline C. W. Hoyng, Carel B. den Hollander, Anneke I. |
author_facet | de Breuk, Anita Lechanteur, Yara T. E. Astuti, Galuh Galbany, Jordi Corominas Klaver, Caroline C. W. Hoyng, Carel B. den Hollander, Anneke I. |
author_sort | de Breuk, Anita |
collection | PubMed |
description | Early onset drusen maculopathy (EODM) can lead to advanced macular degeneration at a young age, affecting quality of life. However, the genetic causes of EODM are not well studied. We performed whole genome sequencing in 49 EODM patients. Common genetic variants were analysed by calculating genetic risk scores based on 52 age‐related macular generation (AMD)‐associated variants, and we analysed rare variants in candidate genes to identify potential deleterious variants that might contribute to EODM development. We demonstrate that the 52 AMD‐associated variants contributed to EODM, especially variants located in the complement pathway. Furthermore, we identified 26 rare genetic variants predicted to be pathogenic based on in silico prediction tools or based on reported pathogenicity in literature. These variants are located predominantly in the complement and lipid metabolism pathways. Last, evaluation of 18 genes causing inherited retinal dystrophies that can mimic AMD characteristics, revealed 11 potential deleterious variants in eight EODM patients. However, phenotypic characteristics did not point towards a retinal dystrophy in these patients. In conclusion, this study reports new insights into rare variants that are potentially involved in EODM development, and which are relevant for future studies unravelling the aetiology of EODM. |
format | Online Article Text |
id | pubmed-9825904 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Blackwell Publishing Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-98259042023-01-09 Common and rare variants in patients with early onset drusen maculopathy de Breuk, Anita Lechanteur, Yara T. E. Astuti, Galuh Galbany, Jordi Corominas Klaver, Caroline C. W. Hoyng, Carel B. den Hollander, Anneke I. Clin Genet Original Articles Early onset drusen maculopathy (EODM) can lead to advanced macular degeneration at a young age, affecting quality of life. However, the genetic causes of EODM are not well studied. We performed whole genome sequencing in 49 EODM patients. Common genetic variants were analysed by calculating genetic risk scores based on 52 age‐related macular generation (AMD)‐associated variants, and we analysed rare variants in candidate genes to identify potential deleterious variants that might contribute to EODM development. We demonstrate that the 52 AMD‐associated variants contributed to EODM, especially variants located in the complement pathway. Furthermore, we identified 26 rare genetic variants predicted to be pathogenic based on in silico prediction tools or based on reported pathogenicity in literature. These variants are located predominantly in the complement and lipid metabolism pathways. Last, evaluation of 18 genes causing inherited retinal dystrophies that can mimic AMD characteristics, revealed 11 potential deleterious variants in eight EODM patients. However, phenotypic characteristics did not point towards a retinal dystrophy in these patients. In conclusion, this study reports new insights into rare variants that are potentially involved in EODM development, and which are relevant for future studies unravelling the aetiology of EODM. Blackwell Publishing Ltd 2022-09-13 2022-11 /pmc/articles/PMC9825904/ /pubmed/36053979 http://dx.doi.org/10.1111/cge.14212 Text en © 2022 The Authors. Clinical Genetics published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles de Breuk, Anita Lechanteur, Yara T. E. Astuti, Galuh Galbany, Jordi Corominas Klaver, Caroline C. W. Hoyng, Carel B. den Hollander, Anneke I. Common and rare variants in patients with early onset drusen maculopathy |
title | Common and rare variants in patients with early onset drusen maculopathy |
title_full | Common and rare variants in patients with early onset drusen maculopathy |
title_fullStr | Common and rare variants in patients with early onset drusen maculopathy |
title_full_unstemmed | Common and rare variants in patients with early onset drusen maculopathy |
title_short | Common and rare variants in patients with early onset drusen maculopathy |
title_sort | common and rare variants in patients with early onset drusen maculopathy |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825904/ https://www.ncbi.nlm.nih.gov/pubmed/36053979 http://dx.doi.org/10.1111/cge.14212 |
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