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Common and rare variants in patients with early onset drusen maculopathy

Early onset drusen maculopathy (EODM) can lead to advanced macular degeneration at a young age, affecting quality of life. However, the genetic causes of EODM are not well studied. We performed whole genome sequencing in 49 EODM patients. Common genetic variants were analysed by calculating genetic...

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Autores principales: de Breuk, Anita, Lechanteur, Yara T. E., Astuti, Galuh, Galbany, Jordi Corominas, Klaver, Caroline C. W., Hoyng, Carel B., den Hollander, Anneke I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Blackwell Publishing Ltd 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825904/
https://www.ncbi.nlm.nih.gov/pubmed/36053979
http://dx.doi.org/10.1111/cge.14212
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author de Breuk, Anita
Lechanteur, Yara T. E.
Astuti, Galuh
Galbany, Jordi Corominas
Klaver, Caroline C. W.
Hoyng, Carel B.
den Hollander, Anneke I.
author_facet de Breuk, Anita
Lechanteur, Yara T. E.
Astuti, Galuh
Galbany, Jordi Corominas
Klaver, Caroline C. W.
Hoyng, Carel B.
den Hollander, Anneke I.
author_sort de Breuk, Anita
collection PubMed
description Early onset drusen maculopathy (EODM) can lead to advanced macular degeneration at a young age, affecting quality of life. However, the genetic causes of EODM are not well studied. We performed whole genome sequencing in 49 EODM patients. Common genetic variants were analysed by calculating genetic risk scores based on 52 age‐related macular generation (AMD)‐associated variants, and we analysed rare variants in candidate genes to identify potential deleterious variants that might contribute to EODM development. We demonstrate that the 52 AMD‐associated variants contributed to EODM, especially variants located in the complement pathway. Furthermore, we identified 26 rare genetic variants predicted to be pathogenic based on in silico prediction tools or based on reported pathogenicity in literature. These variants are located predominantly in the complement and lipid metabolism pathways. Last, evaluation of 18 genes causing inherited retinal dystrophies that can mimic AMD characteristics, revealed 11 potential deleterious variants in eight EODM patients. However, phenotypic characteristics did not point towards a retinal dystrophy in these patients. In conclusion, this study reports new insights into rare variants that are potentially involved in EODM development, and which are relevant for future studies unravelling the aetiology of EODM.
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spelling pubmed-98259042023-01-09 Common and rare variants in patients with early onset drusen maculopathy de Breuk, Anita Lechanteur, Yara T. E. Astuti, Galuh Galbany, Jordi Corominas Klaver, Caroline C. W. Hoyng, Carel B. den Hollander, Anneke I. Clin Genet Original Articles Early onset drusen maculopathy (EODM) can lead to advanced macular degeneration at a young age, affecting quality of life. However, the genetic causes of EODM are not well studied. We performed whole genome sequencing in 49 EODM patients. Common genetic variants were analysed by calculating genetic risk scores based on 52 age‐related macular generation (AMD)‐associated variants, and we analysed rare variants in candidate genes to identify potential deleterious variants that might contribute to EODM development. We demonstrate that the 52 AMD‐associated variants contributed to EODM, especially variants located in the complement pathway. Furthermore, we identified 26 rare genetic variants predicted to be pathogenic based on in silico prediction tools or based on reported pathogenicity in literature. These variants are located predominantly in the complement and lipid metabolism pathways. Last, evaluation of 18 genes causing inherited retinal dystrophies that can mimic AMD characteristics, revealed 11 potential deleterious variants in eight EODM patients. However, phenotypic characteristics did not point towards a retinal dystrophy in these patients. In conclusion, this study reports new insights into rare variants that are potentially involved in EODM development, and which are relevant for future studies unravelling the aetiology of EODM. Blackwell Publishing Ltd 2022-09-13 2022-11 /pmc/articles/PMC9825904/ /pubmed/36053979 http://dx.doi.org/10.1111/cge.14212 Text en © 2022 The Authors. Clinical Genetics published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
de Breuk, Anita
Lechanteur, Yara T. E.
Astuti, Galuh
Galbany, Jordi Corominas
Klaver, Caroline C. W.
Hoyng, Carel B.
den Hollander, Anneke I.
Common and rare variants in patients with early onset drusen maculopathy
title Common and rare variants in patients with early onset drusen maculopathy
title_full Common and rare variants in patients with early onset drusen maculopathy
title_fullStr Common and rare variants in patients with early onset drusen maculopathy
title_full_unstemmed Common and rare variants in patients with early onset drusen maculopathy
title_short Common and rare variants in patients with early onset drusen maculopathy
title_sort common and rare variants in patients with early onset drusen maculopathy
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825904/
https://www.ncbi.nlm.nih.gov/pubmed/36053979
http://dx.doi.org/10.1111/cge.14212
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