Cargando…

A computational approach for modeling electronic circular dichroism of solvated chromophores

The present study consists in a novel computational protocol to model the UV‐circular dichroism spectra of solvated species. It makes use of quantum‐chemical calculations on a series of conformations of a flexible chromophore or on a series of chromophore/solvent clusters extracted from molecular dy...

Descripción completa

Detalles Bibliográficos
Autores principales: Monti, Marta, Stener, Mauro, Aschi, Massimiliano
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825941/
https://www.ncbi.nlm.nih.gov/pubmed/36134712
http://dx.doi.org/10.1002/jcc.27001
_version_ 1784866733767524352
author Monti, Marta
Stener, Mauro
Aschi, Massimiliano
author_facet Monti, Marta
Stener, Mauro
Aschi, Massimiliano
author_sort Monti, Marta
collection PubMed
description The present study consists in a novel computational protocol to model the UV‐circular dichroism spectra of solvated species. It makes use of quantum‐chemical calculations on a series of conformations of a flexible chromophore or on a series of chromophore/solvent clusters extracted from molecular dynamic simulations. The protocol is described and applied to the aqueous cationic tripeptide GAG(+) and to the aqueous neutral decapeptide (GVGVP)(2). The protocol has proven able to: (i) properly consider the conformational motion of solute in the given environment; (ii) give the actual statistical weight of each conformational state; (iii) provide a reliable quantum mechanical method able to reproduce the spectral features. Temperature effects on conformations and spectral properties are properly taken into account. The role of explicit solvent on the conformational analysis and the spectra calculation is discussed. The comparison of the calculated circular dichroism spectra with experimental ones recorded at different temperatures represents a strict validation test of the method.
format Online
Article
Text
id pubmed-9825941
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher John Wiley & Sons, Inc.
record_format MEDLINE/PubMed
spelling pubmed-98259412023-01-09 A computational approach for modeling electronic circular dichroism of solvated chromophores Monti, Marta Stener, Mauro Aschi, Massimiliano J Comput Chem Research Articles The present study consists in a novel computational protocol to model the UV‐circular dichroism spectra of solvated species. It makes use of quantum‐chemical calculations on a series of conformations of a flexible chromophore or on a series of chromophore/solvent clusters extracted from molecular dynamic simulations. The protocol is described and applied to the aqueous cationic tripeptide GAG(+) and to the aqueous neutral decapeptide (GVGVP)(2). The protocol has proven able to: (i) properly consider the conformational motion of solute in the given environment; (ii) give the actual statistical weight of each conformational state; (iii) provide a reliable quantum mechanical method able to reproduce the spectral features. Temperature effects on conformations and spectral properties are properly taken into account. The role of explicit solvent on the conformational analysis and the spectra calculation is discussed. The comparison of the calculated circular dichroism spectra with experimental ones recorded at different temperatures represents a strict validation test of the method. John Wiley & Sons, Inc. 2022-09-22 2022-11-15 /pmc/articles/PMC9825941/ /pubmed/36134712 http://dx.doi.org/10.1002/jcc.27001 Text en © 2022 The Authors. Journal of Computational Chemistry published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Monti, Marta
Stener, Mauro
Aschi, Massimiliano
A computational approach for modeling electronic circular dichroism of solvated chromophores
title A computational approach for modeling electronic circular dichroism of solvated chromophores
title_full A computational approach for modeling electronic circular dichroism of solvated chromophores
title_fullStr A computational approach for modeling electronic circular dichroism of solvated chromophores
title_full_unstemmed A computational approach for modeling electronic circular dichroism of solvated chromophores
title_short A computational approach for modeling electronic circular dichroism of solvated chromophores
title_sort computational approach for modeling electronic circular dichroism of solvated chromophores
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825941/
https://www.ncbi.nlm.nih.gov/pubmed/36134712
http://dx.doi.org/10.1002/jcc.27001
work_keys_str_mv AT montimarta acomputationalapproachformodelingelectroniccirculardichroismofsolvatedchromophores
AT stenermauro acomputationalapproachformodelingelectroniccirculardichroismofsolvatedchromophores
AT aschimassimiliano acomputationalapproachformodelingelectroniccirculardichroismofsolvatedchromophores
AT montimarta computationalapproachformodelingelectroniccirculardichroismofsolvatedchromophores
AT stenermauro computationalapproachformodelingelectroniccirculardichroismofsolvatedchromophores
AT aschimassimiliano computationalapproachformodelingelectroniccirculardichroismofsolvatedchromophores