Cargando…
A computational approach for modeling electronic circular dichroism of solvated chromophores
The present study consists in a novel computational protocol to model the UV‐circular dichroism spectra of solvated species. It makes use of quantum‐chemical calculations on a series of conformations of a flexible chromophore or on a series of chromophore/solvent clusters extracted from molecular dy...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825941/ https://www.ncbi.nlm.nih.gov/pubmed/36134712 http://dx.doi.org/10.1002/jcc.27001 |
_version_ | 1784866733767524352 |
---|---|
author | Monti, Marta Stener, Mauro Aschi, Massimiliano |
author_facet | Monti, Marta Stener, Mauro Aschi, Massimiliano |
author_sort | Monti, Marta |
collection | PubMed |
description | The present study consists in a novel computational protocol to model the UV‐circular dichroism spectra of solvated species. It makes use of quantum‐chemical calculations on a series of conformations of a flexible chromophore or on a series of chromophore/solvent clusters extracted from molecular dynamic simulations. The protocol is described and applied to the aqueous cationic tripeptide GAG(+) and to the aqueous neutral decapeptide (GVGVP)(2). The protocol has proven able to: (i) properly consider the conformational motion of solute in the given environment; (ii) give the actual statistical weight of each conformational state; (iii) provide a reliable quantum mechanical method able to reproduce the spectral features. Temperature effects on conformations and spectral properties are properly taken into account. The role of explicit solvent on the conformational analysis and the spectra calculation is discussed. The comparison of the calculated circular dichroism spectra with experimental ones recorded at different temperatures represents a strict validation test of the method. |
format | Online Article Text |
id | pubmed-9825941 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98259412023-01-09 A computational approach for modeling electronic circular dichroism of solvated chromophores Monti, Marta Stener, Mauro Aschi, Massimiliano J Comput Chem Research Articles The present study consists in a novel computational protocol to model the UV‐circular dichroism spectra of solvated species. It makes use of quantum‐chemical calculations on a series of conformations of a flexible chromophore or on a series of chromophore/solvent clusters extracted from molecular dynamic simulations. The protocol is described and applied to the aqueous cationic tripeptide GAG(+) and to the aqueous neutral decapeptide (GVGVP)(2). The protocol has proven able to: (i) properly consider the conformational motion of solute in the given environment; (ii) give the actual statistical weight of each conformational state; (iii) provide a reliable quantum mechanical method able to reproduce the spectral features. Temperature effects on conformations and spectral properties are properly taken into account. The role of explicit solvent on the conformational analysis and the spectra calculation is discussed. The comparison of the calculated circular dichroism spectra with experimental ones recorded at different temperatures represents a strict validation test of the method. John Wiley & Sons, Inc. 2022-09-22 2022-11-15 /pmc/articles/PMC9825941/ /pubmed/36134712 http://dx.doi.org/10.1002/jcc.27001 Text en © 2022 The Authors. Journal of Computational Chemistry published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Monti, Marta Stener, Mauro Aschi, Massimiliano A computational approach for modeling electronic circular dichroism of solvated chromophores |
title | A computational approach for modeling electronic circular dichroism of solvated chromophores |
title_full | A computational approach for modeling electronic circular dichroism of solvated chromophores |
title_fullStr | A computational approach for modeling electronic circular dichroism of solvated chromophores |
title_full_unstemmed | A computational approach for modeling electronic circular dichroism of solvated chromophores |
title_short | A computational approach for modeling electronic circular dichroism of solvated chromophores |
title_sort | computational approach for modeling electronic circular dichroism of solvated chromophores |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9825941/ https://www.ncbi.nlm.nih.gov/pubmed/36134712 http://dx.doi.org/10.1002/jcc.27001 |
work_keys_str_mv | AT montimarta acomputationalapproachformodelingelectroniccirculardichroismofsolvatedchromophores AT stenermauro acomputationalapproachformodelingelectroniccirculardichroismofsolvatedchromophores AT aschimassimiliano acomputationalapproachformodelingelectroniccirculardichroismofsolvatedchromophores AT montimarta computationalapproachformodelingelectroniccirculardichroismofsolvatedchromophores AT stenermauro computationalapproachformodelingelectroniccirculardichroismofsolvatedchromophores AT aschimassimiliano computationalapproachformodelingelectroniccirculardichroismofsolvatedchromophores |