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Crystal structure of the polyketide cyclase from Mycobacterium tuberculosis : Polyketide cyclase crystal structure

About 40% of proteins are classified as conserved hypothetical proteins in Mycobacterium tuberculosis (TB). Identification and characterization of these proteins are beneficial to understand the pathogenesis of TB and exploiting novel drugs for TB treatments. The polyketide cyclase, a protein from M...

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Autores principales: Zhuang, Jie, Fan, Shihui, Guo, Chenyun, Feng, Liubin, Wang, Huilin, Lin, Donghai, Liao, Xinli
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9828297/
https://www.ncbi.nlm.nih.gov/pubmed/36625169
http://dx.doi.org/10.3724/abbs.2022033
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author Zhuang, Jie
Fan, Shihui
Guo, Chenyun
Feng, Liubin
Wang, Huilin
Lin, Donghai
Liao, Xinli
author_facet Zhuang, Jie
Fan, Shihui
Guo, Chenyun
Feng, Liubin
Wang, Huilin
Lin, Donghai
Liao, Xinli
author_sort Zhuang, Jie
collection PubMed
description About 40% of proteins are classified as conserved hypothetical proteins in Mycobacterium tuberculosis (TB). Identification and characterization of these proteins are beneficial to understand the pathogenesis of TB and exploiting novel drugs for TB treatments. The polyketide cyclase, a protein from M. tuberculosis ( MtPC) has been annotated as a hypothetical protein in Uniprot database. Sequence analysis shows that the MtPC belongs to the NTF2-like superfamily proteins with diverse functions. Here, we determined the crystal structure of MtPC at a resolution of 2.4 Å and measured backbone relaxation parameters for the MtPC protein. MtPC exists as a dimer in solution, and each subunit contains a six-stranded mixed β-sheet and three α helixes which are arranged in the order α1-α2-β1-β2-α3-β3-β4-β5-β6. The NMR dynamics analysis showed that the overall structure of MtPC is highly rigid on ps-ns time scales. Furthermore, we predicted the potential function of MtPC based on the crystal structure. Our results lay the basis for further exploiting and mechanistically understanding the biological functions of MtPC.
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spelling pubmed-98282972023-02-10 Crystal structure of the polyketide cyclase from Mycobacterium tuberculosis : Polyketide cyclase crystal structure Zhuang, Jie Fan, Shihui Guo, Chenyun Feng, Liubin Wang, Huilin Lin, Donghai Liao, Xinli Acta Biochim Biophys Sin (Shanghai) Research Article About 40% of proteins are classified as conserved hypothetical proteins in Mycobacterium tuberculosis (TB). Identification and characterization of these proteins are beneficial to understand the pathogenesis of TB and exploiting novel drugs for TB treatments. The polyketide cyclase, a protein from M. tuberculosis ( MtPC) has been annotated as a hypothetical protein in Uniprot database. Sequence analysis shows that the MtPC belongs to the NTF2-like superfamily proteins with diverse functions. Here, we determined the crystal structure of MtPC at a resolution of 2.4 Å and measured backbone relaxation parameters for the MtPC protein. MtPC exists as a dimer in solution, and each subunit contains a six-stranded mixed β-sheet and three α helixes which are arranged in the order α1-α2-β1-β2-α3-β3-β4-β5-β6. The NMR dynamics analysis showed that the overall structure of MtPC is highly rigid on ps-ns time scales. Furthermore, we predicted the potential function of MtPC based on the crystal structure. Our results lay the basis for further exploiting and mechanistically understanding the biological functions of MtPC. Oxford University Press 2022-04-06 /pmc/articles/PMC9828297/ /pubmed/36625169 http://dx.doi.org/10.3724/abbs.2022033 Text en © The Author(s) 2021. https://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Zhuang, Jie
Fan, Shihui
Guo, Chenyun
Feng, Liubin
Wang, Huilin
Lin, Donghai
Liao, Xinli
Crystal structure of the polyketide cyclase from Mycobacterium tuberculosis : Polyketide cyclase crystal structure
title Crystal structure of the polyketide cyclase from Mycobacterium tuberculosis : Polyketide cyclase crystal structure
title_full Crystal structure of the polyketide cyclase from Mycobacterium tuberculosis : Polyketide cyclase crystal structure
title_fullStr Crystal structure of the polyketide cyclase from Mycobacterium tuberculosis : Polyketide cyclase crystal structure
title_full_unstemmed Crystal structure of the polyketide cyclase from Mycobacterium tuberculosis : Polyketide cyclase crystal structure
title_short Crystal structure of the polyketide cyclase from Mycobacterium tuberculosis : Polyketide cyclase crystal structure
title_sort crystal structure of the polyketide cyclase from mycobacterium tuberculosis : polyketide cyclase crystal structure
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9828297/
https://www.ncbi.nlm.nih.gov/pubmed/36625169
http://dx.doi.org/10.3724/abbs.2022033
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