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Crystal structure of the polyketide cyclase from Mycobacterium tuberculosis : Polyketide cyclase crystal structure
About 40% of proteins are classified as conserved hypothetical proteins in Mycobacterium tuberculosis (TB). Identification and characterization of these proteins are beneficial to understand the pathogenesis of TB and exploiting novel drugs for TB treatments. The polyketide cyclase, a protein from M...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9828297/ https://www.ncbi.nlm.nih.gov/pubmed/36625169 http://dx.doi.org/10.3724/abbs.2022033 |
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author | Zhuang, Jie Fan, Shihui Guo, Chenyun Feng, Liubin Wang, Huilin Lin, Donghai Liao, Xinli |
author_facet | Zhuang, Jie Fan, Shihui Guo, Chenyun Feng, Liubin Wang, Huilin Lin, Donghai Liao, Xinli |
author_sort | Zhuang, Jie |
collection | PubMed |
description | About 40% of proteins are classified as conserved hypothetical proteins in Mycobacterium tuberculosis (TB). Identification and characterization of these proteins are beneficial to understand the pathogenesis of TB and exploiting novel drugs for TB treatments. The polyketide cyclase, a protein from M. tuberculosis ( MtPC) has been annotated as a hypothetical protein in Uniprot database. Sequence analysis shows that the MtPC belongs to the NTF2-like superfamily proteins with diverse functions. Here, we determined the crystal structure of MtPC at a resolution of 2.4 Å and measured backbone relaxation parameters for the MtPC protein. MtPC exists as a dimer in solution, and each subunit contains a six-stranded mixed β-sheet and three α helixes which are arranged in the order α1-α2-β1-β2-α3-β3-β4-β5-β6. The NMR dynamics analysis showed that the overall structure of MtPC is highly rigid on ps-ns time scales. Furthermore, we predicted the potential function of MtPC based on the crystal structure. Our results lay the basis for further exploiting and mechanistically understanding the biological functions of MtPC. |
format | Online Article Text |
id | pubmed-9828297 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-98282972023-02-10 Crystal structure of the polyketide cyclase from Mycobacterium tuberculosis : Polyketide cyclase crystal structure Zhuang, Jie Fan, Shihui Guo, Chenyun Feng, Liubin Wang, Huilin Lin, Donghai Liao, Xinli Acta Biochim Biophys Sin (Shanghai) Research Article About 40% of proteins are classified as conserved hypothetical proteins in Mycobacterium tuberculosis (TB). Identification and characterization of these proteins are beneficial to understand the pathogenesis of TB and exploiting novel drugs for TB treatments. The polyketide cyclase, a protein from M. tuberculosis ( MtPC) has been annotated as a hypothetical protein in Uniprot database. Sequence analysis shows that the MtPC belongs to the NTF2-like superfamily proteins with diverse functions. Here, we determined the crystal structure of MtPC at a resolution of 2.4 Å and measured backbone relaxation parameters for the MtPC protein. MtPC exists as a dimer in solution, and each subunit contains a six-stranded mixed β-sheet and three α helixes which are arranged in the order α1-α2-β1-β2-α3-β3-β4-β5-β6. The NMR dynamics analysis showed that the overall structure of MtPC is highly rigid on ps-ns time scales. Furthermore, we predicted the potential function of MtPC based on the crystal structure. Our results lay the basis for further exploiting and mechanistically understanding the biological functions of MtPC. Oxford University Press 2022-04-06 /pmc/articles/PMC9828297/ /pubmed/36625169 http://dx.doi.org/10.3724/abbs.2022033 Text en © The Author(s) 2021. https://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Zhuang, Jie Fan, Shihui Guo, Chenyun Feng, Liubin Wang, Huilin Lin, Donghai Liao, Xinli Crystal structure of the polyketide cyclase from Mycobacterium tuberculosis : Polyketide cyclase crystal structure |
title | Crystal structure of the polyketide cyclase from
Mycobacterium tuberculosis
: Polyketide cyclase crystal structure |
title_full | Crystal structure of the polyketide cyclase from
Mycobacterium tuberculosis
: Polyketide cyclase crystal structure |
title_fullStr | Crystal structure of the polyketide cyclase from
Mycobacterium tuberculosis
: Polyketide cyclase crystal structure |
title_full_unstemmed | Crystal structure of the polyketide cyclase from
Mycobacterium tuberculosis
: Polyketide cyclase crystal structure |
title_short | Crystal structure of the polyketide cyclase from
Mycobacterium tuberculosis
: Polyketide cyclase crystal structure |
title_sort | crystal structure of the polyketide cyclase from
mycobacterium tuberculosis
: polyketide cyclase crystal structure |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9828297/ https://www.ncbi.nlm.nih.gov/pubmed/36625169 http://dx.doi.org/10.3724/abbs.2022033 |
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