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Galaxy Training: A powerful framework for teaching!
There is an ongoing explosion of scientific datasets being generated, brought on by recent technological advances in many areas of the natural sciences. As a result, the life sciences have become increasingly computational in nature, and bioinformatics has taken on a central role in research studies...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9829167/ https://www.ncbi.nlm.nih.gov/pubmed/36622853 http://dx.doi.org/10.1371/journal.pcbi.1010752 |
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author | Hiltemann, Saskia Rasche, Helena Gladman, Simon Hotz, Hans-Rudolf Larivière, Delphine Blankenberg, Daniel Jagtap, Pratik D. Wollmann, Thomas Bretaudeau, Anthony Goué, Nadia Griffin, Timothy J. Royaux, Coline Le Bras, Yvan Mehta, Subina Syme, Anna Coppens, Frederik Droesbeke, Bert Soranzo, Nicola Bacon, Wendi Psomopoulos, Fotis Gallardo-Alba, Cristóbal Davis, John Föll, Melanie Christine Fahrner, Matthias Doyle, Maria A. Serrano-Solano, Beatriz Fouilloux, Anne Claire van Heusden, Peter Maier, Wolfgang Clements, Dave Heyl, Florian Grüning, Björn Batut, Bérénice |
author_facet | Hiltemann, Saskia Rasche, Helena Gladman, Simon Hotz, Hans-Rudolf Larivière, Delphine Blankenberg, Daniel Jagtap, Pratik D. Wollmann, Thomas Bretaudeau, Anthony Goué, Nadia Griffin, Timothy J. Royaux, Coline Le Bras, Yvan Mehta, Subina Syme, Anna Coppens, Frederik Droesbeke, Bert Soranzo, Nicola Bacon, Wendi Psomopoulos, Fotis Gallardo-Alba, Cristóbal Davis, John Föll, Melanie Christine Fahrner, Matthias Doyle, Maria A. Serrano-Solano, Beatriz Fouilloux, Anne Claire van Heusden, Peter Maier, Wolfgang Clements, Dave Heyl, Florian Grüning, Björn Batut, Bérénice |
author_sort | Hiltemann, Saskia |
collection | PubMed |
description | There is an ongoing explosion of scientific datasets being generated, brought on by recent technological advances in many areas of the natural sciences. As a result, the life sciences have become increasingly computational in nature, and bioinformatics has taken on a central role in research studies. However, basic computational skills, data analysis, and stewardship are still rarely taught in life science educational programs, resulting in a skills gap in many of the researchers tasked with analysing these big datasets. In order to address this skills gap and empower researchers to perform their own data analyses, the Galaxy Training Network (GTN) has previously developed the Galaxy Training Platform (https://training.galaxyproject.org), an open access, community-driven framework for the collection of FAIR (Findable, Accessible, Interoperable, Reusable) training materials for data analysis utilizing the user-friendly Galaxy framework as its primary data analysis platform. Since its inception, this training platform has thrived, with the number of tutorials and contributors growing rapidly, and the range of topics extending beyond life sciences to include topics such as climatology, cheminformatics, and machine learning. While initially aimed at supporting researchers directly, the GTN framework has proven to be an invaluable resource for educators as well. We have focused our efforts in recent years on adding increased support for this growing community of instructors. New features have been added to facilitate the use of the materials in a classroom setting, simplifying the contribution flow for new materials, and have added a set of train-the-trainer lessons. Here, we present the latest developments in the GTN project, aimed at facilitating the use of the Galaxy Training materials by educators, and its usage in different learning environments. |
format | Online Article Text |
id | pubmed-9829167 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-98291672023-01-10 Galaxy Training: A powerful framework for teaching! Hiltemann, Saskia Rasche, Helena Gladman, Simon Hotz, Hans-Rudolf Larivière, Delphine Blankenberg, Daniel Jagtap, Pratik D. Wollmann, Thomas Bretaudeau, Anthony Goué, Nadia Griffin, Timothy J. Royaux, Coline Le Bras, Yvan Mehta, Subina Syme, Anna Coppens, Frederik Droesbeke, Bert Soranzo, Nicola Bacon, Wendi Psomopoulos, Fotis Gallardo-Alba, Cristóbal Davis, John Föll, Melanie Christine Fahrner, Matthias Doyle, Maria A. Serrano-Solano, Beatriz Fouilloux, Anne Claire van Heusden, Peter Maier, Wolfgang Clements, Dave Heyl, Florian Grüning, Björn Batut, Bérénice PLoS Comput Biol Education There is an ongoing explosion of scientific datasets being generated, brought on by recent technological advances in many areas of the natural sciences. As a result, the life sciences have become increasingly computational in nature, and bioinformatics has taken on a central role in research studies. However, basic computational skills, data analysis, and stewardship are still rarely taught in life science educational programs, resulting in a skills gap in many of the researchers tasked with analysing these big datasets. In order to address this skills gap and empower researchers to perform their own data analyses, the Galaxy Training Network (GTN) has previously developed the Galaxy Training Platform (https://training.galaxyproject.org), an open access, community-driven framework for the collection of FAIR (Findable, Accessible, Interoperable, Reusable) training materials for data analysis utilizing the user-friendly Galaxy framework as its primary data analysis platform. Since its inception, this training platform has thrived, with the number of tutorials and contributors growing rapidly, and the range of topics extending beyond life sciences to include topics such as climatology, cheminformatics, and machine learning. While initially aimed at supporting researchers directly, the GTN framework has proven to be an invaluable resource for educators as well. We have focused our efforts in recent years on adding increased support for this growing community of instructors. New features have been added to facilitate the use of the materials in a classroom setting, simplifying the contribution flow for new materials, and have added a set of train-the-trainer lessons. Here, we present the latest developments in the GTN project, aimed at facilitating the use of the Galaxy Training materials by educators, and its usage in different learning environments. Public Library of Science 2023-01-09 /pmc/articles/PMC9829167/ /pubmed/36622853 http://dx.doi.org/10.1371/journal.pcbi.1010752 Text en https://creativecommons.org/publicdomain/zero/1.0/This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication. |
spellingShingle | Education Hiltemann, Saskia Rasche, Helena Gladman, Simon Hotz, Hans-Rudolf Larivière, Delphine Blankenberg, Daniel Jagtap, Pratik D. Wollmann, Thomas Bretaudeau, Anthony Goué, Nadia Griffin, Timothy J. Royaux, Coline Le Bras, Yvan Mehta, Subina Syme, Anna Coppens, Frederik Droesbeke, Bert Soranzo, Nicola Bacon, Wendi Psomopoulos, Fotis Gallardo-Alba, Cristóbal Davis, John Föll, Melanie Christine Fahrner, Matthias Doyle, Maria A. Serrano-Solano, Beatriz Fouilloux, Anne Claire van Heusden, Peter Maier, Wolfgang Clements, Dave Heyl, Florian Grüning, Björn Batut, Bérénice Galaxy Training: A powerful framework for teaching! |
title | Galaxy Training: A powerful framework for teaching! |
title_full | Galaxy Training: A powerful framework for teaching! |
title_fullStr | Galaxy Training: A powerful framework for teaching! |
title_full_unstemmed | Galaxy Training: A powerful framework for teaching! |
title_short | Galaxy Training: A powerful framework for teaching! |
title_sort | galaxy training: a powerful framework for teaching! |
topic | Education |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9829167/ https://www.ncbi.nlm.nih.gov/pubmed/36622853 http://dx.doi.org/10.1371/journal.pcbi.1010752 |
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