Cargando…

Galaxy Training: A powerful framework for teaching!

There is an ongoing explosion of scientific datasets being generated, brought on by recent technological advances in many areas of the natural sciences. As a result, the life sciences have become increasingly computational in nature, and bioinformatics has taken on a central role in research studies...

Descripción completa

Detalles Bibliográficos
Autores principales: Hiltemann, Saskia, Rasche, Helena, Gladman, Simon, Hotz, Hans-Rudolf, Larivière, Delphine, Blankenberg, Daniel, Jagtap, Pratik D., Wollmann, Thomas, Bretaudeau, Anthony, Goué, Nadia, Griffin, Timothy J., Royaux, Coline, Le Bras, Yvan, Mehta, Subina, Syme, Anna, Coppens, Frederik, Droesbeke, Bert, Soranzo, Nicola, Bacon, Wendi, Psomopoulos, Fotis, Gallardo-Alba, Cristóbal, Davis, John, Föll, Melanie Christine, Fahrner, Matthias, Doyle, Maria A., Serrano-Solano, Beatriz, Fouilloux, Anne Claire, van Heusden, Peter, Maier, Wolfgang, Clements, Dave, Heyl, Florian, Grüning, Björn, Batut, Bérénice
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9829167/
https://www.ncbi.nlm.nih.gov/pubmed/36622853
http://dx.doi.org/10.1371/journal.pcbi.1010752
_version_ 1784867409368186880
author Hiltemann, Saskia
Rasche, Helena
Gladman, Simon
Hotz, Hans-Rudolf
Larivière, Delphine
Blankenberg, Daniel
Jagtap, Pratik D.
Wollmann, Thomas
Bretaudeau, Anthony
Goué, Nadia
Griffin, Timothy J.
Royaux, Coline
Le Bras, Yvan
Mehta, Subina
Syme, Anna
Coppens, Frederik
Droesbeke, Bert
Soranzo, Nicola
Bacon, Wendi
Psomopoulos, Fotis
Gallardo-Alba, Cristóbal
Davis, John
Föll, Melanie Christine
Fahrner, Matthias
Doyle, Maria A.
Serrano-Solano, Beatriz
Fouilloux, Anne Claire
van Heusden, Peter
Maier, Wolfgang
Clements, Dave
Heyl, Florian
Grüning, Björn
Batut, Bérénice
author_facet Hiltemann, Saskia
Rasche, Helena
Gladman, Simon
Hotz, Hans-Rudolf
Larivière, Delphine
Blankenberg, Daniel
Jagtap, Pratik D.
Wollmann, Thomas
Bretaudeau, Anthony
Goué, Nadia
Griffin, Timothy J.
Royaux, Coline
Le Bras, Yvan
Mehta, Subina
Syme, Anna
Coppens, Frederik
Droesbeke, Bert
Soranzo, Nicola
Bacon, Wendi
Psomopoulos, Fotis
Gallardo-Alba, Cristóbal
Davis, John
Föll, Melanie Christine
Fahrner, Matthias
Doyle, Maria A.
Serrano-Solano, Beatriz
Fouilloux, Anne Claire
van Heusden, Peter
Maier, Wolfgang
Clements, Dave
Heyl, Florian
Grüning, Björn
Batut, Bérénice
author_sort Hiltemann, Saskia
collection PubMed
description There is an ongoing explosion of scientific datasets being generated, brought on by recent technological advances in many areas of the natural sciences. As a result, the life sciences have become increasingly computational in nature, and bioinformatics has taken on a central role in research studies. However, basic computational skills, data analysis, and stewardship are still rarely taught in life science educational programs, resulting in a skills gap in many of the researchers tasked with analysing these big datasets. In order to address this skills gap and empower researchers to perform their own data analyses, the Galaxy Training Network (GTN) has previously developed the Galaxy Training Platform (https://training.galaxyproject.org), an open access, community-driven framework for the collection of FAIR (Findable, Accessible, Interoperable, Reusable) training materials for data analysis utilizing the user-friendly Galaxy framework as its primary data analysis platform. Since its inception, this training platform has thrived, with the number of tutorials and contributors growing rapidly, and the range of topics extending beyond life sciences to include topics such as climatology, cheminformatics, and machine learning. While initially aimed at supporting researchers directly, the GTN framework has proven to be an invaluable resource for educators as well. We have focused our efforts in recent years on adding increased support for this growing community of instructors. New features have been added to facilitate the use of the materials in a classroom setting, simplifying the contribution flow for new materials, and have added a set of train-the-trainer lessons. Here, we present the latest developments in the GTN project, aimed at facilitating the use of the Galaxy Training materials by educators, and its usage in different learning environments.
format Online
Article
Text
id pubmed-9829167
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-98291672023-01-10 Galaxy Training: A powerful framework for teaching! Hiltemann, Saskia Rasche, Helena Gladman, Simon Hotz, Hans-Rudolf Larivière, Delphine Blankenberg, Daniel Jagtap, Pratik D. Wollmann, Thomas Bretaudeau, Anthony Goué, Nadia Griffin, Timothy J. Royaux, Coline Le Bras, Yvan Mehta, Subina Syme, Anna Coppens, Frederik Droesbeke, Bert Soranzo, Nicola Bacon, Wendi Psomopoulos, Fotis Gallardo-Alba, Cristóbal Davis, John Föll, Melanie Christine Fahrner, Matthias Doyle, Maria A. Serrano-Solano, Beatriz Fouilloux, Anne Claire van Heusden, Peter Maier, Wolfgang Clements, Dave Heyl, Florian Grüning, Björn Batut, Bérénice PLoS Comput Biol Education There is an ongoing explosion of scientific datasets being generated, brought on by recent technological advances in many areas of the natural sciences. As a result, the life sciences have become increasingly computational in nature, and bioinformatics has taken on a central role in research studies. However, basic computational skills, data analysis, and stewardship are still rarely taught in life science educational programs, resulting in a skills gap in many of the researchers tasked with analysing these big datasets. In order to address this skills gap and empower researchers to perform their own data analyses, the Galaxy Training Network (GTN) has previously developed the Galaxy Training Platform (https://training.galaxyproject.org), an open access, community-driven framework for the collection of FAIR (Findable, Accessible, Interoperable, Reusable) training materials for data analysis utilizing the user-friendly Galaxy framework as its primary data analysis platform. Since its inception, this training platform has thrived, with the number of tutorials and contributors growing rapidly, and the range of topics extending beyond life sciences to include topics such as climatology, cheminformatics, and machine learning. While initially aimed at supporting researchers directly, the GTN framework has proven to be an invaluable resource for educators as well. We have focused our efforts in recent years on adding increased support for this growing community of instructors. New features have been added to facilitate the use of the materials in a classroom setting, simplifying the contribution flow for new materials, and have added a set of train-the-trainer lessons. Here, we present the latest developments in the GTN project, aimed at facilitating the use of the Galaxy Training materials by educators, and its usage in different learning environments. Public Library of Science 2023-01-09 /pmc/articles/PMC9829167/ /pubmed/36622853 http://dx.doi.org/10.1371/journal.pcbi.1010752 Text en https://creativecommons.org/publicdomain/zero/1.0/This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication.
spellingShingle Education
Hiltemann, Saskia
Rasche, Helena
Gladman, Simon
Hotz, Hans-Rudolf
Larivière, Delphine
Blankenberg, Daniel
Jagtap, Pratik D.
Wollmann, Thomas
Bretaudeau, Anthony
Goué, Nadia
Griffin, Timothy J.
Royaux, Coline
Le Bras, Yvan
Mehta, Subina
Syme, Anna
Coppens, Frederik
Droesbeke, Bert
Soranzo, Nicola
Bacon, Wendi
Psomopoulos, Fotis
Gallardo-Alba, Cristóbal
Davis, John
Föll, Melanie Christine
Fahrner, Matthias
Doyle, Maria A.
Serrano-Solano, Beatriz
Fouilloux, Anne Claire
van Heusden, Peter
Maier, Wolfgang
Clements, Dave
Heyl, Florian
Grüning, Björn
Batut, Bérénice
Galaxy Training: A powerful framework for teaching!
title Galaxy Training: A powerful framework for teaching!
title_full Galaxy Training: A powerful framework for teaching!
title_fullStr Galaxy Training: A powerful framework for teaching!
title_full_unstemmed Galaxy Training: A powerful framework for teaching!
title_short Galaxy Training: A powerful framework for teaching!
title_sort galaxy training: a powerful framework for teaching!
topic Education
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9829167/
https://www.ncbi.nlm.nih.gov/pubmed/36622853
http://dx.doi.org/10.1371/journal.pcbi.1010752
work_keys_str_mv AT hiltemannsaskia galaxytrainingapowerfulframeworkforteaching
AT raschehelena galaxytrainingapowerfulframeworkforteaching
AT gladmansimon galaxytrainingapowerfulframeworkforteaching
AT hotzhansrudolf galaxytrainingapowerfulframeworkforteaching
AT larivieredelphine galaxytrainingapowerfulframeworkforteaching
AT blankenbergdaniel galaxytrainingapowerfulframeworkforteaching
AT jagtappratikd galaxytrainingapowerfulframeworkforteaching
AT wollmannthomas galaxytrainingapowerfulframeworkforteaching
AT bretaudeauanthony galaxytrainingapowerfulframeworkforteaching
AT gouenadia galaxytrainingapowerfulframeworkforteaching
AT griffintimothyj galaxytrainingapowerfulframeworkforteaching
AT royauxcoline galaxytrainingapowerfulframeworkforteaching
AT lebrasyvan galaxytrainingapowerfulframeworkforteaching
AT mehtasubina galaxytrainingapowerfulframeworkforteaching
AT symeanna galaxytrainingapowerfulframeworkforteaching
AT coppensfrederik galaxytrainingapowerfulframeworkforteaching
AT droesbekebert galaxytrainingapowerfulframeworkforteaching
AT soranzonicola galaxytrainingapowerfulframeworkforteaching
AT baconwendi galaxytrainingapowerfulframeworkforteaching
AT psomopoulosfotis galaxytrainingapowerfulframeworkforteaching
AT gallardoalbacristobal galaxytrainingapowerfulframeworkforteaching
AT davisjohn galaxytrainingapowerfulframeworkforteaching
AT follmelaniechristine galaxytrainingapowerfulframeworkforteaching
AT fahrnermatthias galaxytrainingapowerfulframeworkforteaching
AT doylemariaa galaxytrainingapowerfulframeworkforteaching
AT serranosolanobeatriz galaxytrainingapowerfulframeworkforteaching
AT fouillouxanneclaire galaxytrainingapowerfulframeworkforteaching
AT vanheusdenpeter galaxytrainingapowerfulframeworkforteaching
AT maierwolfgang galaxytrainingapowerfulframeworkforteaching
AT clementsdave galaxytrainingapowerfulframeworkforteaching
AT heylflorian galaxytrainingapowerfulframeworkforteaching
AT galaxytrainingapowerfulframeworkforteaching
AT gruningbjorn galaxytrainingapowerfulframeworkforteaching
AT batutberenice galaxytrainingapowerfulframeworkforteaching