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Development of fatty acid metabolism-related models in lung adenocarcinomaA Review
Lung adenocarcinoma (LUAD) is 1 of the common malignancy with a poor prognosis. MATERIALS AND METHODS: Based on bioinformatics, the fatty acid metabolism model of LUAD was developed. We downloaded LUAD transcriptome data from the cancer genome atlas and gene expression omnibus databases. We used bio...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9829279/ https://www.ncbi.nlm.nih.gov/pubmed/36607846 http://dx.doi.org/10.1097/MD.0000000000032542 |
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author | Ye, Wei Li, Xingxing |
author_facet | Ye, Wei Li, Xingxing |
author_sort | Ye, Wei |
collection | PubMed |
description | Lung adenocarcinoma (LUAD) is 1 of the common malignancy with a poor prognosis. MATERIALS AND METHODS: Based on bioinformatics, the fatty acid metabolism model of LUAD was developed. We downloaded LUAD transcriptome data from the cancer genome atlas and gene expression omnibus databases. We used bioinformatics methods to construct a fatty acid metabolism-related predictive risk model to predict the prognosis of LUAD. We further explored the relationship between prognostic models and survival and immunity. RESULTS: We identified 17 prognosis-related fatty acid-associated genes and constructed prognostic models. In the the cancer genome atlas cohort, the prognosis was worse in the high-risk score group compared to the low-risk score group. The ROC curve confirmed its accuracy. Subsequently, we used the gene expression omnibus database to confirm the above findings. There were differences in immune infiltrating cell abundance and immune function between the high-risk score group and low-risk score group. The immune dysfunction and exclusion (TIDE) based algorithm showed that the low-risk score group was more suitable for the immune treatment. CONCLUSION: Fatty acid metabolic patterns can deepen the understanding of the immune microenvironment of LUAD and be used to guide the formulation of immunotherapy protocols. |
format | Online Article Text |
id | pubmed-9829279 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-98292792023-01-24 Development of fatty acid metabolism-related models in lung adenocarcinomaA Review Ye, Wei Li, Xingxing Medicine (Baltimore) 5700 Lung adenocarcinoma (LUAD) is 1 of the common malignancy with a poor prognosis. MATERIALS AND METHODS: Based on bioinformatics, the fatty acid metabolism model of LUAD was developed. We downloaded LUAD transcriptome data from the cancer genome atlas and gene expression omnibus databases. We used bioinformatics methods to construct a fatty acid metabolism-related predictive risk model to predict the prognosis of LUAD. We further explored the relationship between prognostic models and survival and immunity. RESULTS: We identified 17 prognosis-related fatty acid-associated genes and constructed prognostic models. In the the cancer genome atlas cohort, the prognosis was worse in the high-risk score group compared to the low-risk score group. The ROC curve confirmed its accuracy. Subsequently, we used the gene expression omnibus database to confirm the above findings. There were differences in immune infiltrating cell abundance and immune function between the high-risk score group and low-risk score group. The immune dysfunction and exclusion (TIDE) based algorithm showed that the low-risk score group was more suitable for the immune treatment. CONCLUSION: Fatty acid metabolic patterns can deepen the understanding of the immune microenvironment of LUAD and be used to guide the formulation of immunotherapy protocols. Lippincott Williams & Wilkins 2023-01-06 /pmc/articles/PMC9829279/ /pubmed/36607846 http://dx.doi.org/10.1097/MD.0000000000032542 Text en Copyright © 2022 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | 5700 Ye, Wei Li, Xingxing Development of fatty acid metabolism-related models in lung adenocarcinomaA Review |
title | Development of fatty acid metabolism-related models in lung adenocarcinomaA Review |
title_full | Development of fatty acid metabolism-related models in lung adenocarcinomaA Review |
title_fullStr | Development of fatty acid metabolism-related models in lung adenocarcinomaA Review |
title_full_unstemmed | Development of fatty acid metabolism-related models in lung adenocarcinomaA Review |
title_short | Development of fatty acid metabolism-related models in lung adenocarcinomaA Review |
title_sort | development of fatty acid metabolism-related models in lung adenocarcinomaa review |
topic | 5700 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9829279/ https://www.ncbi.nlm.nih.gov/pubmed/36607846 http://dx.doi.org/10.1097/MD.0000000000032542 |
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