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A protocol for developing a classification system of mosquitoes using transfer learning

Mosquito identification and classification are the most important steps in a surveillance program of mosquito-borne diseases. With conventional approach of data collection, the process of sorting and classification are laborious and time-consuming. The advancement of computer vision with transfer le...

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Autores principales: Isawasan, Pradeep, Abdullah, Zetty Ilham, Ong, Song-Quan, Salleh, Khairulliza Ahmad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9829699/
https://www.ncbi.nlm.nih.gov/pubmed/36636281
http://dx.doi.org/10.1016/j.mex.2022.101947
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author Isawasan, Pradeep
Abdullah, Zetty Ilham
Ong, Song-Quan
Salleh, Khairulliza Ahmad
author_facet Isawasan, Pradeep
Abdullah, Zetty Ilham
Ong, Song-Quan
Salleh, Khairulliza Ahmad
author_sort Isawasan, Pradeep
collection PubMed
description Mosquito identification and classification are the most important steps in a surveillance program of mosquito-borne diseases. With conventional approach of data collection, the process of sorting and classification are laborious and time-consuming. The advancement of computer vision with transfer learning provides excellent alternative to the challenge. Transfer learning is a type of machine learning that is viable and durable in image classification with limited training images. This protocol aims to develop step-by-step procedure in developing a classification system with transfer learning algorithm for mosquito, we demonstrate the protocol to classify two species of Aedes mosquito - Aedes aegypti L. and Aedes albopitus L, but user can adopt the protocol for higher number of species classification. We demonstrated the way of start from the scratch, fine-tuning two pre-trained model performance by using different combination of hyperparameters – batch size and learning rate, and explain the terminology in the Appendix. This protocol target on the domain expert such as entomologist and public health practices to develop their own model to solve the task of mosquito/insect classification.
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spelling pubmed-98296992023-01-11 A protocol for developing a classification system of mosquitoes using transfer learning Isawasan, Pradeep Abdullah, Zetty Ilham Ong, Song-Quan Salleh, Khairulliza Ahmad MethodsX Protocol Article Mosquito identification and classification are the most important steps in a surveillance program of mosquito-borne diseases. With conventional approach of data collection, the process of sorting and classification are laborious and time-consuming. The advancement of computer vision with transfer learning provides excellent alternative to the challenge. Transfer learning is a type of machine learning that is viable and durable in image classification with limited training images. This protocol aims to develop step-by-step procedure in developing a classification system with transfer learning algorithm for mosquito, we demonstrate the protocol to classify two species of Aedes mosquito - Aedes aegypti L. and Aedes albopitus L, but user can adopt the protocol for higher number of species classification. We demonstrated the way of start from the scratch, fine-tuning two pre-trained model performance by using different combination of hyperparameters – batch size and learning rate, and explain the terminology in the Appendix. This protocol target on the domain expert such as entomologist and public health practices to develop their own model to solve the task of mosquito/insect classification. Elsevier 2022-11-28 /pmc/articles/PMC9829699/ /pubmed/36636281 http://dx.doi.org/10.1016/j.mex.2022.101947 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Protocol Article
Isawasan, Pradeep
Abdullah, Zetty Ilham
Ong, Song-Quan
Salleh, Khairulliza Ahmad
A protocol for developing a classification system of mosquitoes using transfer learning
title A protocol for developing a classification system of mosquitoes using transfer learning
title_full A protocol for developing a classification system of mosquitoes using transfer learning
title_fullStr A protocol for developing a classification system of mosquitoes using transfer learning
title_full_unstemmed A protocol for developing a classification system of mosquitoes using transfer learning
title_short A protocol for developing a classification system of mosquitoes using transfer learning
title_sort protocol for developing a classification system of mosquitoes using transfer learning
topic Protocol Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9829699/
https://www.ncbi.nlm.nih.gov/pubmed/36636281
http://dx.doi.org/10.1016/j.mex.2022.101947
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