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A protocol for developing a classification system of mosquitoes using transfer learning
Mosquito identification and classification are the most important steps in a surveillance program of mosquito-borne diseases. With conventional approach of data collection, the process of sorting and classification are laborious and time-consuming. The advancement of computer vision with transfer le...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9829699/ https://www.ncbi.nlm.nih.gov/pubmed/36636281 http://dx.doi.org/10.1016/j.mex.2022.101947 |
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author | Isawasan, Pradeep Abdullah, Zetty Ilham Ong, Song-Quan Salleh, Khairulliza Ahmad |
author_facet | Isawasan, Pradeep Abdullah, Zetty Ilham Ong, Song-Quan Salleh, Khairulliza Ahmad |
author_sort | Isawasan, Pradeep |
collection | PubMed |
description | Mosquito identification and classification are the most important steps in a surveillance program of mosquito-borne diseases. With conventional approach of data collection, the process of sorting and classification are laborious and time-consuming. The advancement of computer vision with transfer learning provides excellent alternative to the challenge. Transfer learning is a type of machine learning that is viable and durable in image classification with limited training images. This protocol aims to develop step-by-step procedure in developing a classification system with transfer learning algorithm for mosquito, we demonstrate the protocol to classify two species of Aedes mosquito - Aedes aegypti L. and Aedes albopitus L, but user can adopt the protocol for higher number of species classification. We demonstrated the way of start from the scratch, fine-tuning two pre-trained model performance by using different combination of hyperparameters – batch size and learning rate, and explain the terminology in the Appendix. This protocol target on the domain expert such as entomologist and public health practices to develop their own model to solve the task of mosquito/insect classification. |
format | Online Article Text |
id | pubmed-9829699 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-98296992023-01-11 A protocol for developing a classification system of mosquitoes using transfer learning Isawasan, Pradeep Abdullah, Zetty Ilham Ong, Song-Quan Salleh, Khairulliza Ahmad MethodsX Protocol Article Mosquito identification and classification are the most important steps in a surveillance program of mosquito-borne diseases. With conventional approach of data collection, the process of sorting and classification are laborious and time-consuming. The advancement of computer vision with transfer learning provides excellent alternative to the challenge. Transfer learning is a type of machine learning that is viable and durable in image classification with limited training images. This protocol aims to develop step-by-step procedure in developing a classification system with transfer learning algorithm for mosquito, we demonstrate the protocol to classify two species of Aedes mosquito - Aedes aegypti L. and Aedes albopitus L, but user can adopt the protocol for higher number of species classification. We demonstrated the way of start from the scratch, fine-tuning two pre-trained model performance by using different combination of hyperparameters – batch size and learning rate, and explain the terminology in the Appendix. This protocol target on the domain expert such as entomologist and public health practices to develop their own model to solve the task of mosquito/insect classification. Elsevier 2022-11-28 /pmc/articles/PMC9829699/ /pubmed/36636281 http://dx.doi.org/10.1016/j.mex.2022.101947 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Protocol Article Isawasan, Pradeep Abdullah, Zetty Ilham Ong, Song-Quan Salleh, Khairulliza Ahmad A protocol for developing a classification system of mosquitoes using transfer learning |
title | A protocol for developing a classification system of mosquitoes using transfer learning |
title_full | A protocol for developing a classification system of mosquitoes using transfer learning |
title_fullStr | A protocol for developing a classification system of mosquitoes using transfer learning |
title_full_unstemmed | A protocol for developing a classification system of mosquitoes using transfer learning |
title_short | A protocol for developing a classification system of mosquitoes using transfer learning |
title_sort | protocol for developing a classification system of mosquitoes using transfer learning |
topic | Protocol Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9829699/ https://www.ncbi.nlm.nih.gov/pubmed/36636281 http://dx.doi.org/10.1016/j.mex.2022.101947 |
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