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Automated Variable Electric-Field DFT Application for Evaluation of Optimally Oriented Electric Fields on Chemical Reactivity
[Image: see text] Recent theoretical work and experiments at molecular junctions have provided a strong conceptualization for the effects of oriented electric fields (OEFs) on organic reactions. Depending on the axis of application, OEFs can increase (or decrease) the reaction rate or distinguish be...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9830642/ https://www.ncbi.nlm.nih.gov/pubmed/36507909 http://dx.doi.org/10.1021/acs.joc.2c01893 |
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author | Hanaway, Dalton J. Kennedy, C. Rose |
author_facet | Hanaway, Dalton J. Kennedy, C. Rose |
author_sort | Hanaway, Dalton J. |
collection | PubMed |
description | [Image: see text] Recent theoretical work and experiments at molecular junctions have provided a strong conceptualization for the effects of oriented electric fields (OEFs) on organic reactions. Depending on the axis of application, OEFs can increase (or decrease) the reaction rate or distinguish between isomeric pathways. Despite the conceptual elegance of OEFs, which may be applied externally or induced locally, as tools for catalyzing organic reactions, implementation in synthetically relevant systems has been hampered by inefficiencies in evaluating reaction sensitivity to field effects. Herein, we describe the development of the Automated Variable Electric-Field DFT Application (A.V.E.D.A.) for streamlined evaluation of a reaction’s susceptibility to OEFs. This open-source software was designed to be accessible for nonexpert users of computational and programming tools. Following initiation by a single command (and with no subsequent intervention) the Linux workflow manages a series of density functional theory calculations and mathematical manipulations to optimize local-minimum and transition-state structures in oriented electric fields of increasing magnitude. The resulting molecular and reaction dipole moments, field-perturbed geometries, and net effective activation energies are compiled for user interpretation. Ten representative pericyclic reactions that showcase the development and evaluation of A.V.E.D.A. are described. |
format | Online Article Text |
id | pubmed-9830642 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-98306422023-01-11 Automated Variable Electric-Field DFT Application for Evaluation of Optimally Oriented Electric Fields on Chemical Reactivity Hanaway, Dalton J. Kennedy, C. Rose J Org Chem [Image: see text] Recent theoretical work and experiments at molecular junctions have provided a strong conceptualization for the effects of oriented electric fields (OEFs) on organic reactions. Depending on the axis of application, OEFs can increase (or decrease) the reaction rate or distinguish between isomeric pathways. Despite the conceptual elegance of OEFs, which may be applied externally or induced locally, as tools for catalyzing organic reactions, implementation in synthetically relevant systems has been hampered by inefficiencies in evaluating reaction sensitivity to field effects. Herein, we describe the development of the Automated Variable Electric-Field DFT Application (A.V.E.D.A.) for streamlined evaluation of a reaction’s susceptibility to OEFs. This open-source software was designed to be accessible for nonexpert users of computational and programming tools. Following initiation by a single command (and with no subsequent intervention) the Linux workflow manages a series of density functional theory calculations and mathematical manipulations to optimize local-minimum and transition-state structures in oriented electric fields of increasing magnitude. The resulting molecular and reaction dipole moments, field-perturbed geometries, and net effective activation energies are compiled for user interpretation. Ten representative pericyclic reactions that showcase the development and evaluation of A.V.E.D.A. are described. American Chemical Society 2022-12-12 2023-01-06 /pmc/articles/PMC9830642/ /pubmed/36507909 http://dx.doi.org/10.1021/acs.joc.2c01893 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Hanaway, Dalton J. Kennedy, C. Rose Automated Variable Electric-Field DFT Application for Evaluation of Optimally Oriented Electric Fields on Chemical Reactivity |
title | Automated Variable
Electric-Field DFT Application
for Evaluation of Optimally Oriented Electric Fields on Chemical Reactivity |
title_full | Automated Variable
Electric-Field DFT Application
for Evaluation of Optimally Oriented Electric Fields on Chemical Reactivity |
title_fullStr | Automated Variable
Electric-Field DFT Application
for Evaluation of Optimally Oriented Electric Fields on Chemical Reactivity |
title_full_unstemmed | Automated Variable
Electric-Field DFT Application
for Evaluation of Optimally Oriented Electric Fields on Chemical Reactivity |
title_short | Automated Variable
Electric-Field DFT Application
for Evaluation of Optimally Oriented Electric Fields on Chemical Reactivity |
title_sort | automated variable
electric-field dft application
for evaluation of optimally oriented electric fields on chemical reactivity |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9830642/ https://www.ncbi.nlm.nih.gov/pubmed/36507909 http://dx.doi.org/10.1021/acs.joc.2c01893 |
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