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Silencing of GhORP_A02 enhances drought tolerance in Gossypium hirsutum
BACKGROUND: ORP (Oxysterol-binding protein-related proteins) genes play a role in lipid metabolism, vesicular transferring and signaling, and non-vesicular sterol transport. However, no systematic identification and analysis of ORP genes have been reported in cotton. RESULT: In this study, we identi...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9830788/ https://www.ncbi.nlm.nih.gov/pubmed/36624379 http://dx.doi.org/10.1186/s12864-022-09099-y |
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author | Tajo, Sani Muhammad Pan, Zhaoe Jia, Yinhua He, Shoupu Chen, Baojun Sadau, Salisu Bello KM, Yusuf Ajadi, Aboleri Adijat Nazir, Mian Faisal Auta, Umar Geng, Xiaoli Du, Xiongming |
author_facet | Tajo, Sani Muhammad Pan, Zhaoe Jia, Yinhua He, Shoupu Chen, Baojun Sadau, Salisu Bello KM, Yusuf Ajadi, Aboleri Adijat Nazir, Mian Faisal Auta, Umar Geng, Xiaoli Du, Xiongming |
author_sort | Tajo, Sani Muhammad |
collection | PubMed |
description | BACKGROUND: ORP (Oxysterol-binding protein-related proteins) genes play a role in lipid metabolism, vesicular transferring and signaling, and non-vesicular sterol transport. However, no systematic identification and analysis of ORP genes have been reported in cotton. RESULT: In this study, we identified 14, 14, 7, and 7 ORP genes in G. hirsutum, G. barbadense, G. arboreum, and G. raimondii, respectively. Phylogenetic analysis showed that all ORP genes could be classified into four groups. Gene structure and conserved motif analysis suggest that the function of this gene family was conserved. The Ka/Ks analysis showed that this gene family was exposed to purifying selection during evolution. Transcriptome data showed that four ORP genes, especially GhORP_A02, were induced by abiotic stress treatment. The cis-acting elements in the ORP promoters were responsive to phytohormones and various abiotic stresses. The silenced plants of GhORP_A02 were more sensitive to drought stress when compared to control. CONCLUSION: The major finding of this study shed light on the potential role of ORP genes in abiotic stress and provided a fundamental resource for further analysis in cotton. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-022-09099-y. |
format | Online Article Text |
id | pubmed-9830788 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-98307882023-01-11 Silencing of GhORP_A02 enhances drought tolerance in Gossypium hirsutum Tajo, Sani Muhammad Pan, Zhaoe Jia, Yinhua He, Shoupu Chen, Baojun Sadau, Salisu Bello KM, Yusuf Ajadi, Aboleri Adijat Nazir, Mian Faisal Auta, Umar Geng, Xiaoli Du, Xiongming BMC Genomics Research BACKGROUND: ORP (Oxysterol-binding protein-related proteins) genes play a role in lipid metabolism, vesicular transferring and signaling, and non-vesicular sterol transport. However, no systematic identification and analysis of ORP genes have been reported in cotton. RESULT: In this study, we identified 14, 14, 7, and 7 ORP genes in G. hirsutum, G. barbadense, G. arboreum, and G. raimondii, respectively. Phylogenetic analysis showed that all ORP genes could be classified into four groups. Gene structure and conserved motif analysis suggest that the function of this gene family was conserved. The Ka/Ks analysis showed that this gene family was exposed to purifying selection during evolution. Transcriptome data showed that four ORP genes, especially GhORP_A02, were induced by abiotic stress treatment. The cis-acting elements in the ORP promoters were responsive to phytohormones and various abiotic stresses. The silenced plants of GhORP_A02 were more sensitive to drought stress when compared to control. CONCLUSION: The major finding of this study shed light on the potential role of ORP genes in abiotic stress and provided a fundamental resource for further analysis in cotton. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-022-09099-y. BioMed Central 2023-01-09 /pmc/articles/PMC9830788/ /pubmed/36624379 http://dx.doi.org/10.1186/s12864-022-09099-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Tajo, Sani Muhammad Pan, Zhaoe Jia, Yinhua He, Shoupu Chen, Baojun Sadau, Salisu Bello KM, Yusuf Ajadi, Aboleri Adijat Nazir, Mian Faisal Auta, Umar Geng, Xiaoli Du, Xiongming Silencing of GhORP_A02 enhances drought tolerance in Gossypium hirsutum |
title | Silencing of GhORP_A02 enhances drought tolerance in Gossypium hirsutum |
title_full | Silencing of GhORP_A02 enhances drought tolerance in Gossypium hirsutum |
title_fullStr | Silencing of GhORP_A02 enhances drought tolerance in Gossypium hirsutum |
title_full_unstemmed | Silencing of GhORP_A02 enhances drought tolerance in Gossypium hirsutum |
title_short | Silencing of GhORP_A02 enhances drought tolerance in Gossypium hirsutum |
title_sort | silencing of ghorp_a02 enhances drought tolerance in gossypium hirsutum |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9830788/ https://www.ncbi.nlm.nih.gov/pubmed/36624379 http://dx.doi.org/10.1186/s12864-022-09099-y |
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