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Calibration of Cohorts of Virtual Patient Heart Models Using Bayesian History Matching
Previous patient-specific model calibration techniques have treated each patient independently, making the methods expensive for large-scale clinical adoption. In this work, we show how we can reuse simulations to accelerate the patient-specific model calibration pipeline. To represent anatomy, we u...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9832095/ https://www.ncbi.nlm.nih.gov/pubmed/36271218 http://dx.doi.org/10.1007/s10439-022-03095-9 |
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author | Rodero, Cristobal Longobardi, Stefano Augustin, Christoph Strocchi, Marina Plank, Gernot Lamata, Pablo Niederer, Steven A. |
author_facet | Rodero, Cristobal Longobardi, Stefano Augustin, Christoph Strocchi, Marina Plank, Gernot Lamata, Pablo Niederer, Steven A. |
author_sort | Rodero, Cristobal |
collection | PubMed |
description | Previous patient-specific model calibration techniques have treated each patient independently, making the methods expensive for large-scale clinical adoption. In this work, we show how we can reuse simulations to accelerate the patient-specific model calibration pipeline. To represent anatomy, we used a Statistical Shape Model and to represent function, we ran electrophysiological simulations. We study the use of 14 biomarkers to calibrate the model, training one Gaussian Process Emulator (GPE) per biomarker. To fit the models, we followed a Bayesian History Matching (BHM) strategy, wherein each iteration a region of the parameter space is ruled out if the emulation with that set of parameter values produces is “implausible”. We found that without running any extra simulations we can find 87.41% of the non-implausible parameter combinations. Moreover, we showed how reducing the uncertainty of the measurements from 10 to 5% can reduce the final parameter space by 6 orders of magnitude. This innovation allows for a model fitting technique, therefore reducing the computational load of future biomedical studies. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10439-022-03095-9. |
format | Online Article Text |
id | pubmed-9832095 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-98320952023-01-12 Calibration of Cohorts of Virtual Patient Heart Models Using Bayesian History Matching Rodero, Cristobal Longobardi, Stefano Augustin, Christoph Strocchi, Marina Plank, Gernot Lamata, Pablo Niederer, Steven A. Ann Biomed Eng S.I. : Modeling for Advancing Regulatory Science Previous patient-specific model calibration techniques have treated each patient independently, making the methods expensive for large-scale clinical adoption. In this work, we show how we can reuse simulations to accelerate the patient-specific model calibration pipeline. To represent anatomy, we used a Statistical Shape Model and to represent function, we ran electrophysiological simulations. We study the use of 14 biomarkers to calibrate the model, training one Gaussian Process Emulator (GPE) per biomarker. To fit the models, we followed a Bayesian History Matching (BHM) strategy, wherein each iteration a region of the parameter space is ruled out if the emulation with that set of parameter values produces is “implausible”. We found that without running any extra simulations we can find 87.41% of the non-implausible parameter combinations. Moreover, we showed how reducing the uncertainty of the measurements from 10 to 5% can reduce the final parameter space by 6 orders of magnitude. This innovation allows for a model fitting technique, therefore reducing the computational load of future biomedical studies. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10439-022-03095-9. Springer International Publishing 2022-10-21 2023 /pmc/articles/PMC9832095/ /pubmed/36271218 http://dx.doi.org/10.1007/s10439-022-03095-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | S.I. : Modeling for Advancing Regulatory Science Rodero, Cristobal Longobardi, Stefano Augustin, Christoph Strocchi, Marina Plank, Gernot Lamata, Pablo Niederer, Steven A. Calibration of Cohorts of Virtual Patient Heart Models Using Bayesian History Matching |
title | Calibration of Cohorts of Virtual Patient Heart Models Using Bayesian History Matching |
title_full | Calibration of Cohorts of Virtual Patient Heart Models Using Bayesian History Matching |
title_fullStr | Calibration of Cohorts of Virtual Patient Heart Models Using Bayesian History Matching |
title_full_unstemmed | Calibration of Cohorts of Virtual Patient Heart Models Using Bayesian History Matching |
title_short | Calibration of Cohorts of Virtual Patient Heart Models Using Bayesian History Matching |
title_sort | calibration of cohorts of virtual patient heart models using bayesian history matching |
topic | S.I. : Modeling for Advancing Regulatory Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9832095/ https://www.ncbi.nlm.nih.gov/pubmed/36271218 http://dx.doi.org/10.1007/s10439-022-03095-9 |
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