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Engineering DszC Mutants from Transition State Macrodipole Considerations and Evolutionary Sequence Analysis

[Image: see text] We describe an approach to identify enzyme mutants with increased turnover using the enzyme DszC as a case study. Our approach is based on recalculating the barriers of alanine mutants through single-point energy calculations at the hybrid QM/MM level in the wild-type reactant and...

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Detalles Bibliográficos
Autores principales: Neves, Rui P. P., Ramos, Maria J., Fernandes, Pedro A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9832474/
https://www.ncbi.nlm.nih.gov/pubmed/36534708
http://dx.doi.org/10.1021/acs.jcim.2c01337
Descripción
Sumario:[Image: see text] We describe an approach to identify enzyme mutants with increased turnover using the enzyme DszC as a case study. Our approach is based on recalculating the barriers of alanine mutants through single-point energy calculations at the hybrid QM/MM level in the wild-type reactant and transition state geometries. We analyze the difference in the electron density between the reactant and transition state to identify sites/residues where electrostatic interactions stabilize the transition state over the reactants. We also assess the insertion of a unit probe charge to identify positions in which the introduction of charged residues lowers the barrier.