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The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China

The complete chloroplast (cp) genome of Ardisia brevicaulis Diels 1900, one traditionally medicinal plant usually used in southern China, was first assembled and reported in this study. The genome size is 156,742 bp (37.1% GC content), containing a large single-copy (LSC) region of 86,329 bp, a smal...

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Autores principales: Wang, Zhiwei, Hu, Youqiong, Wei, Shenghua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9833397/
https://www.ncbi.nlm.nih.gov/pubmed/36643808
http://dx.doi.org/10.1080/23802359.2022.2161326
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author Wang, Zhiwei
Hu, Youqiong
Wei, Shenghua
author_facet Wang, Zhiwei
Hu, Youqiong
Wei, Shenghua
author_sort Wang, Zhiwei
collection PubMed
description The complete chloroplast (cp) genome of Ardisia brevicaulis Diels 1900, one traditionally medicinal plant usually used in southern China, was first assembled and reported in this study. The genome size is 156,742 bp (37.1% GC content), containing a large single-copy (LSC) region of 86,329 bp, a small single-copy (SSC) region of 18,417 bp, and a pair of inverted repeat regions (IRs) of 25,998 bp. 134 genes (89 protein-coding, 37 tRNA, and 8 rRNA genes) are annotated in the whole cp genome, including 115 unique genes (81 protein-coding, 30 tRNA, and 4 rRNA genes). Phylogenetic analysis showed that A. brevicaulis is closely related to A. primulifolia and A. villosa, indicating their close phylogenetic relationship. The cp genome of A. brevicaulis could provide valuable genomic information for the phylogeny, molecular identification and discovery of new medicinal plant resources in Ardisia Swartz 1788.
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spelling pubmed-98333972023-01-12 The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China Wang, Zhiwei Hu, Youqiong Wei, Shenghua Mitochondrial DNA B Resour Plastome Announcement The complete chloroplast (cp) genome of Ardisia brevicaulis Diels 1900, one traditionally medicinal plant usually used in southern China, was first assembled and reported in this study. The genome size is 156,742 bp (37.1% GC content), containing a large single-copy (LSC) region of 86,329 bp, a small single-copy (SSC) region of 18,417 bp, and a pair of inverted repeat regions (IRs) of 25,998 bp. 134 genes (89 protein-coding, 37 tRNA, and 8 rRNA genes) are annotated in the whole cp genome, including 115 unique genes (81 protein-coding, 30 tRNA, and 4 rRNA genes). Phylogenetic analysis showed that A. brevicaulis is closely related to A. primulifolia and A. villosa, indicating their close phylogenetic relationship. The cp genome of A. brevicaulis could provide valuable genomic information for the phylogeny, molecular identification and discovery of new medicinal plant resources in Ardisia Swartz 1788. Taylor & Francis 2023-01-08 /pmc/articles/PMC9833397/ /pubmed/36643808 http://dx.doi.org/10.1080/23802359.2022.2161326 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Wang, Zhiwei
Hu, Youqiong
Wei, Shenghua
The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China
title The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China
title_full The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China
title_fullStr The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China
title_full_unstemmed The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China
title_short The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China
title_sort complete chloroplast genome of ardisia brevicaulis diels 1900, one traditional medicinal plant in southern china
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9833397/
https://www.ncbi.nlm.nih.gov/pubmed/36643808
http://dx.doi.org/10.1080/23802359.2022.2161326
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