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The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China
The complete chloroplast (cp) genome of Ardisia brevicaulis Diels 1900, one traditionally medicinal plant usually used in southern China, was first assembled and reported in this study. The genome size is 156,742 bp (37.1% GC content), containing a large single-copy (LSC) region of 86,329 bp, a smal...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9833397/ https://www.ncbi.nlm.nih.gov/pubmed/36643808 http://dx.doi.org/10.1080/23802359.2022.2161326 |
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author | Wang, Zhiwei Hu, Youqiong Wei, Shenghua |
author_facet | Wang, Zhiwei Hu, Youqiong Wei, Shenghua |
author_sort | Wang, Zhiwei |
collection | PubMed |
description | The complete chloroplast (cp) genome of Ardisia brevicaulis Diels 1900, one traditionally medicinal plant usually used in southern China, was first assembled and reported in this study. The genome size is 156,742 bp (37.1% GC content), containing a large single-copy (LSC) region of 86,329 bp, a small single-copy (SSC) region of 18,417 bp, and a pair of inverted repeat regions (IRs) of 25,998 bp. 134 genes (89 protein-coding, 37 tRNA, and 8 rRNA genes) are annotated in the whole cp genome, including 115 unique genes (81 protein-coding, 30 tRNA, and 4 rRNA genes). Phylogenetic analysis showed that A. brevicaulis is closely related to A. primulifolia and A. villosa, indicating their close phylogenetic relationship. The cp genome of A. brevicaulis could provide valuable genomic information for the phylogeny, molecular identification and discovery of new medicinal plant resources in Ardisia Swartz 1788. |
format | Online Article Text |
id | pubmed-9833397 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-98333972023-01-12 The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China Wang, Zhiwei Hu, Youqiong Wei, Shenghua Mitochondrial DNA B Resour Plastome Announcement The complete chloroplast (cp) genome of Ardisia brevicaulis Diels 1900, one traditionally medicinal plant usually used in southern China, was first assembled and reported in this study. The genome size is 156,742 bp (37.1% GC content), containing a large single-copy (LSC) region of 86,329 bp, a small single-copy (SSC) region of 18,417 bp, and a pair of inverted repeat regions (IRs) of 25,998 bp. 134 genes (89 protein-coding, 37 tRNA, and 8 rRNA genes) are annotated in the whole cp genome, including 115 unique genes (81 protein-coding, 30 tRNA, and 4 rRNA genes). Phylogenetic analysis showed that A. brevicaulis is closely related to A. primulifolia and A. villosa, indicating their close phylogenetic relationship. The cp genome of A. brevicaulis could provide valuable genomic information for the phylogeny, molecular identification and discovery of new medicinal plant resources in Ardisia Swartz 1788. Taylor & Francis 2023-01-08 /pmc/articles/PMC9833397/ /pubmed/36643808 http://dx.doi.org/10.1080/23802359.2022.2161326 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Wang, Zhiwei Hu, Youqiong Wei, Shenghua The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China |
title | The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China |
title_full | The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China |
title_fullStr | The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China |
title_full_unstemmed | The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China |
title_short | The complete chloroplast genome of Ardisia brevicaulis Diels 1900, one traditional medicinal plant in southern China |
title_sort | complete chloroplast genome of ardisia brevicaulis diels 1900, one traditional medicinal plant in southern china |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9833397/ https://www.ncbi.nlm.nih.gov/pubmed/36643808 http://dx.doi.org/10.1080/23802359.2022.2161326 |
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