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Application of lncRNA–miRNA–mRNA ceRNA network analysis in the treatment of androgenic alopecia

BACKGROUND: Long noncoding RNAs (lncRNAs) can be used as competitive endogenous RNAs (ceRNAs) to bind to microRNAs (miRNAs) to regulate gene expression. Previous studies have demonstrated that ceRNAs play an important role in the development of tumors. However, it is not clear whether the lncRNA–miR...

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Autores principales: Wei, Hanxiao, Yi, Tian, Li, Qiang, Guo, Yanping, Shen, Caiqi, Jin, Peisheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9833970/
https://www.ncbi.nlm.nih.gov/pubmed/36458379
http://dx.doi.org/10.1002/jcla.24791
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author Wei, Hanxiao
Yi, Tian
Li, Qiang
Guo, Yanping
Shen, Caiqi
Jin, Peisheng
author_facet Wei, Hanxiao
Yi, Tian
Li, Qiang
Guo, Yanping
Shen, Caiqi
Jin, Peisheng
author_sort Wei, Hanxiao
collection PubMed
description BACKGROUND: Long noncoding RNAs (lncRNAs) can be used as competitive endogenous RNAs (ceRNAs) to bind to microRNAs (miRNAs) to regulate gene expression. Previous studies have demonstrated that ceRNAs play an important role in the development of tumors. However, it is not clear whether the lncRNA–miRNA–mRNA ceRNA network plays a role in androgenic alopecia (AGA). METHODS: The hair follicles of three AGA patients and three healthy individuals were collected for high‐throughput whole transcriptome sequencing to screen for differentially expressed lncRNAs. Differentially expressed lncRNA target genes were subjected to databases to predict miRNA–mRNA and lncRNA–miRNA relationship pairs, and a ceRNA network was constructed using Cytoscape software. Relative expression was verified by real‐time quantitative reverse transcription–polymerase chain reaction (qRT‐PCR). RESULTS: 84 lncRNAs were significantly differentially expressed between the hair follicles of AGA patients and those of healthy individuals; 30 were upregulated, and 54 were downregulated. The top 10 upregulated lncRNAs were ENST00000501520, ENST00000448179, ENST00000318291, ENST00000568280, ENST00000561121, ENST00000376609, ENST00000602414, ENST00000573866, ENST00000513358, and ENST00000564194. The top 10 downregulated lncRNAs were ENST00000566804, ENST00000561973, ENST00000587680, ENST00000569927, ENST00000340444, ENST00000424345, ENST00000589787, NR_024344, NR_073026, and NR_110001. The qRT‐PCR validation results and receiver‐operating characteristic curve analysis indicated that one upregulated lncRNA, LOXL1‐AS1 (ENST00000564194), had the most significant clinical diagnostic potential. After further analysis, it was concluded that LOXL1‐AS1 could be used as a sponge to target hsa‐miR‐5193, thereby regulating TP53 expression. CONCLUSION: The ceRNA network‐regulating AGA was constructed through high‐throughput sequencing. Our study also identified a key lncRNA that is possibly related to the AGA pathological process.
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spelling pubmed-98339702023-01-13 Application of lncRNA–miRNA–mRNA ceRNA network analysis in the treatment of androgenic alopecia Wei, Hanxiao Yi, Tian Li, Qiang Guo, Yanping Shen, Caiqi Jin, Peisheng J Clin Lab Anal Research Articles BACKGROUND: Long noncoding RNAs (lncRNAs) can be used as competitive endogenous RNAs (ceRNAs) to bind to microRNAs (miRNAs) to regulate gene expression. Previous studies have demonstrated that ceRNAs play an important role in the development of tumors. However, it is not clear whether the lncRNA–miRNA–mRNA ceRNA network plays a role in androgenic alopecia (AGA). METHODS: The hair follicles of three AGA patients and three healthy individuals were collected for high‐throughput whole transcriptome sequencing to screen for differentially expressed lncRNAs. Differentially expressed lncRNA target genes were subjected to databases to predict miRNA–mRNA and lncRNA–miRNA relationship pairs, and a ceRNA network was constructed using Cytoscape software. Relative expression was verified by real‐time quantitative reverse transcription–polymerase chain reaction (qRT‐PCR). RESULTS: 84 lncRNAs were significantly differentially expressed between the hair follicles of AGA patients and those of healthy individuals; 30 were upregulated, and 54 were downregulated. The top 10 upregulated lncRNAs were ENST00000501520, ENST00000448179, ENST00000318291, ENST00000568280, ENST00000561121, ENST00000376609, ENST00000602414, ENST00000573866, ENST00000513358, and ENST00000564194. The top 10 downregulated lncRNAs were ENST00000566804, ENST00000561973, ENST00000587680, ENST00000569927, ENST00000340444, ENST00000424345, ENST00000589787, NR_024344, NR_073026, and NR_110001. The qRT‐PCR validation results and receiver‐operating characteristic curve analysis indicated that one upregulated lncRNA, LOXL1‐AS1 (ENST00000564194), had the most significant clinical diagnostic potential. After further analysis, it was concluded that LOXL1‐AS1 could be used as a sponge to target hsa‐miR‐5193, thereby regulating TP53 expression. CONCLUSION: The ceRNA network‐regulating AGA was constructed through high‐throughput sequencing. Our study also identified a key lncRNA that is possibly related to the AGA pathological process. John Wiley and Sons Inc. 2022-12-01 /pmc/articles/PMC9833970/ /pubmed/36458379 http://dx.doi.org/10.1002/jcla.24791 Text en © 2022 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Research Articles
Wei, Hanxiao
Yi, Tian
Li, Qiang
Guo, Yanping
Shen, Caiqi
Jin, Peisheng
Application of lncRNA–miRNA–mRNA ceRNA network analysis in the treatment of androgenic alopecia
title Application of lncRNA–miRNA–mRNA ceRNA network analysis in the treatment of androgenic alopecia
title_full Application of lncRNA–miRNA–mRNA ceRNA network analysis in the treatment of androgenic alopecia
title_fullStr Application of lncRNA–miRNA–mRNA ceRNA network analysis in the treatment of androgenic alopecia
title_full_unstemmed Application of lncRNA–miRNA–mRNA ceRNA network analysis in the treatment of androgenic alopecia
title_short Application of lncRNA–miRNA–mRNA ceRNA network analysis in the treatment of androgenic alopecia
title_sort application of lncrna–mirna–mrna cerna network analysis in the treatment of androgenic alopecia
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9833970/
https://www.ncbi.nlm.nih.gov/pubmed/36458379
http://dx.doi.org/10.1002/jcla.24791
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