Cargando…
Generative hypergraph models and spectral embedding
Many complex systems involve interactions between more than two agents. Hypergraphs capture these higher-order interactions through hyperedges that may link more than two nodes. We consider the problem of embedding a hypergraph into low-dimensional Euclidean space so that most interactions are short...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9834284/ https://www.ncbi.nlm.nih.gov/pubmed/36631576 http://dx.doi.org/10.1038/s41598-023-27565-9 |
_version_ | 1784868428740296704 |
---|---|
author | Gong, Xue Higham, Desmond J. Zygalakis, Konstantinos |
author_facet | Gong, Xue Higham, Desmond J. Zygalakis, Konstantinos |
author_sort | Gong, Xue |
collection | PubMed |
description | Many complex systems involve interactions between more than two agents. Hypergraphs capture these higher-order interactions through hyperedges that may link more than two nodes. We consider the problem of embedding a hypergraph into low-dimensional Euclidean space so that most interactions are short-range. This embedding is relevant to many follow-on tasks, such as node reordering, clustering, and visualization. We focus on two spectral embedding algorithms customized to hypergraphs which recover linear and periodic structures respectively. In the periodic case, nodes are positioned on the unit circle. We show that the two spectral hypergraph embedding algorithms are associated with a new class of generative hypergraph models. These models generate hyperedges according to node positions in the embedded space and encourage short-range connections. They allow us to quantify the relative presence of periodic and linear structures in the data through maximum likelihood. They also improve the interpretability of node embedding and provide a metric for hyperedge prediction. We demonstrate the hypergraph embedding and follow-on tasks—including quantifying relative strength of structures, clustering and hyperedge prediction—on synthetic and real-world hypergraphs. We find that the hypergraph approach can outperform clustering algorithms that use only dyadic edges. We also compare several triadic edge prediction methods on high school and primary school contact hypergraphs where our algorithm improves upon benchmark methods when the amount of training data is limited. |
format | Online Article Text |
id | pubmed-9834284 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-98342842023-01-13 Generative hypergraph models and spectral embedding Gong, Xue Higham, Desmond J. Zygalakis, Konstantinos Sci Rep Article Many complex systems involve interactions between more than two agents. Hypergraphs capture these higher-order interactions through hyperedges that may link more than two nodes. We consider the problem of embedding a hypergraph into low-dimensional Euclidean space so that most interactions are short-range. This embedding is relevant to many follow-on tasks, such as node reordering, clustering, and visualization. We focus on two spectral embedding algorithms customized to hypergraphs which recover linear and periodic structures respectively. In the periodic case, nodes are positioned on the unit circle. We show that the two spectral hypergraph embedding algorithms are associated with a new class of generative hypergraph models. These models generate hyperedges according to node positions in the embedded space and encourage short-range connections. They allow us to quantify the relative presence of periodic and linear structures in the data through maximum likelihood. They also improve the interpretability of node embedding and provide a metric for hyperedge prediction. We demonstrate the hypergraph embedding and follow-on tasks—including quantifying relative strength of structures, clustering and hyperedge prediction—on synthetic and real-world hypergraphs. We find that the hypergraph approach can outperform clustering algorithms that use only dyadic edges. We also compare several triadic edge prediction methods on high school and primary school contact hypergraphs where our algorithm improves upon benchmark methods when the amount of training data is limited. Nature Publishing Group UK 2023-01-11 /pmc/articles/PMC9834284/ /pubmed/36631576 http://dx.doi.org/10.1038/s41598-023-27565-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Gong, Xue Higham, Desmond J. Zygalakis, Konstantinos Generative hypergraph models and spectral embedding |
title | Generative hypergraph models and spectral embedding |
title_full | Generative hypergraph models and spectral embedding |
title_fullStr | Generative hypergraph models and spectral embedding |
title_full_unstemmed | Generative hypergraph models and spectral embedding |
title_short | Generative hypergraph models and spectral embedding |
title_sort | generative hypergraph models and spectral embedding |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9834284/ https://www.ncbi.nlm.nih.gov/pubmed/36631576 http://dx.doi.org/10.1038/s41598-023-27565-9 |
work_keys_str_mv | AT gongxue generativehypergraphmodelsandspectralembedding AT highamdesmondj generativehypergraphmodelsandspectralembedding AT zygalakiskonstantinos generativehypergraphmodelsandspectralembedding |