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The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications
Coccotorusbeijingensis Lin et Li, 1990 belongs to Coleoptera, Curculionidae, Curculioninae, Anthonomini. It is a herbivorous insect that damages Celtisbungeana Blume (Ulmaceae) by affecting branch growth. The mitochondrial genome of C.beijingensis was sequenced and annotated to better identify C.bei...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Pensoft Publishers
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9836419/ https://www.ncbi.nlm.nih.gov/pubmed/36761507 http://dx.doi.org/10.3897/BDJ.10.e95935 |
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author | Jiang, Sai Jiang, Lina Li, Ran Gao, Hui Zhang, Aijing Yan, Yurong Zou, Xinzhu Wu, Jixiao Xu, Shuying Yi, Xianfeng Li, Yujian |
author_facet | Jiang, Sai Jiang, Lina Li, Ran Gao, Hui Zhang, Aijing Yan, Yurong Zou, Xinzhu Wu, Jixiao Xu, Shuying Yi, Xianfeng Li, Yujian |
author_sort | Jiang, Sai |
collection | PubMed |
description | Coccotorusbeijingensis Lin et Li, 1990 belongs to Coleoptera, Curculionidae, Curculioninae, Anthonomini. It is a herbivorous insect that damages Celtisbungeana Blume (Ulmaceae) by affecting branch growth. The mitochondrial genome of C.beijingensis was sequenced and annotated to better identify C.beijingensis and related species. The total length of the C.beijingensis mitochondrial genome was 17,071 bp, contained 37 typical genes (13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes) and two control regions (total length: 2,292 bp). Mitochondrial genome composition, nucleotide composition and codon usage are similar to those of other sequenced Curculionidae mitogenomes. All protein-coding genes initiated with ATN and TTG codons and ended with TAA, TAG or incomplete stop codons (TA, T). In addition, analyses of pairwise genetic distances between individual PCGs in Curculionidae species showed that ATP8 was the least conserved gene, while COI was the most conserved. Twenty-one transfer RNAs had typical cloverleaf structures, while trnS1 lacked dihydrouridine (DHU) arms. ML and BI analyses, based on 13 PCGs and two rRNAs from ten species of Curculionidae, strongly support the relationships between C.beijingensis and species of the genus Anthonomus: ((An.eugenii+ An.rubi) + C.beijingensis + (An.pomorum+ An.rectirostris)) (BS = 100; PP = 1). Our phylogenetic analyses could mean that the genus Coccotorus should be sunk under Anthonomus, but more taxon sampling is needed to verify this result. |
format | Online Article Text |
id | pubmed-9836419 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-98364192023-02-08 The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications Jiang, Sai Jiang, Lina Li, Ran Gao, Hui Zhang, Aijing Yan, Yurong Zou, Xinzhu Wu, Jixiao Xu, Shuying Yi, Xianfeng Li, Yujian Biodivers Data J OMIC Data Paper Coccotorusbeijingensis Lin et Li, 1990 belongs to Coleoptera, Curculionidae, Curculioninae, Anthonomini. It is a herbivorous insect that damages Celtisbungeana Blume (Ulmaceae) by affecting branch growth. The mitochondrial genome of C.beijingensis was sequenced and annotated to better identify C.beijingensis and related species. The total length of the C.beijingensis mitochondrial genome was 17,071 bp, contained 37 typical genes (13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes) and two control regions (total length: 2,292 bp). Mitochondrial genome composition, nucleotide composition and codon usage are similar to those of other sequenced Curculionidae mitogenomes. All protein-coding genes initiated with ATN and TTG codons and ended with TAA, TAG or incomplete stop codons (TA, T). In addition, analyses of pairwise genetic distances between individual PCGs in Curculionidae species showed that ATP8 was the least conserved gene, while COI was the most conserved. Twenty-one transfer RNAs had typical cloverleaf structures, while trnS1 lacked dihydrouridine (DHU) arms. ML and BI analyses, based on 13 PCGs and two rRNAs from ten species of Curculionidae, strongly support the relationships between C.beijingensis and species of the genus Anthonomus: ((An.eugenii+ An.rubi) + C.beijingensis + (An.pomorum+ An.rectirostris)) (BS = 100; PP = 1). Our phylogenetic analyses could mean that the genus Coccotorus should be sunk under Anthonomus, but more taxon sampling is needed to verify this result. Pensoft Publishers 2022-12-09 /pmc/articles/PMC9836419/ /pubmed/36761507 http://dx.doi.org/10.3897/BDJ.10.e95935 Text en Sai Jiang, Lina Jiang, Ran Li, Hui Gao, Aijing Zhang, Yurong Yan, Xinzhu Zou, Jixiao Wu, Shuying Xu, Xianfeng Yi, Yujian Li https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | OMIC Data Paper Jiang, Sai Jiang, Lina Li, Ran Gao, Hui Zhang, Aijing Yan, Yurong Zou, Xinzhu Wu, Jixiao Xu, Shuying Yi, Xianfeng Li, Yujian The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications |
title | The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications |
title_full | The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications |
title_fullStr | The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications |
title_full_unstemmed | The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications |
title_short | The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications |
title_sort | complete mitochondrial genome of coccotorusbeijingensis lin et li, 1990 (coleoptera, curculionidae, curculioninae, anthonomini) and its phylogenetic implications |
topic | OMIC Data Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9836419/ https://www.ncbi.nlm.nih.gov/pubmed/36761507 http://dx.doi.org/10.3897/BDJ.10.e95935 |
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