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The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications

Coccotorusbeijingensis Lin et Li, 1990 belongs to Coleoptera, Curculionidae, Curculioninae, Anthonomini. It is a herbivorous insect that damages Celtisbungeana Blume (Ulmaceae) by affecting branch growth. The mitochondrial genome of C.beijingensis was sequenced and annotated to better identify C.bei...

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Autores principales: Jiang, Sai, Jiang, Lina, Li, Ran, Gao, Hui, Zhang, Aijing, Yan, Yurong, Zou, Xinzhu, Wu, Jixiao, Xu, Shuying, Yi, Xianfeng, Li, Yujian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9836419/
https://www.ncbi.nlm.nih.gov/pubmed/36761507
http://dx.doi.org/10.3897/BDJ.10.e95935
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author Jiang, Sai
Jiang, Lina
Li, Ran
Gao, Hui
Zhang, Aijing
Yan, Yurong
Zou, Xinzhu
Wu, Jixiao
Xu, Shuying
Yi, Xianfeng
Li, Yujian
author_facet Jiang, Sai
Jiang, Lina
Li, Ran
Gao, Hui
Zhang, Aijing
Yan, Yurong
Zou, Xinzhu
Wu, Jixiao
Xu, Shuying
Yi, Xianfeng
Li, Yujian
author_sort Jiang, Sai
collection PubMed
description Coccotorusbeijingensis Lin et Li, 1990 belongs to Coleoptera, Curculionidae, Curculioninae, Anthonomini. It is a herbivorous insect that damages Celtisbungeana Blume (Ulmaceae) by affecting branch growth. The mitochondrial genome of C.beijingensis was sequenced and annotated to better identify C.beijingensis and related species. The total length of the C.beijingensis mitochondrial genome was 17,071 bp, contained 37 typical genes (13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes) and two control regions (total length: 2,292 bp). Mitochondrial genome composition, nucleotide composition and codon usage are similar to those of other sequenced Curculionidae mitogenomes. All protein-coding genes initiated with ATN and TTG codons and ended with TAA, TAG or incomplete stop codons (TA, T). In addition, analyses of pairwise genetic distances between individual PCGs in Curculionidae species showed that ATP8 was the least conserved gene, while COI was the most conserved. Twenty-one transfer RNAs had typical cloverleaf structures, while trnS1 lacked dihydrouridine (DHU) arms. ML and BI analyses, based on 13 PCGs and two rRNAs from ten species of Curculionidae, strongly support the relationships between C.beijingensis and species of the genus Anthonomus: ((An.eugenii+ An.rubi) + C.beijingensis + (An.pomorum+ An.rectirostris)) (BS = 100; PP = 1). Our phylogenetic analyses could mean that the genus Coccotorus should be sunk under Anthonomus, but more taxon sampling is needed to verify this result.
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spelling pubmed-98364192023-02-08 The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications Jiang, Sai Jiang, Lina Li, Ran Gao, Hui Zhang, Aijing Yan, Yurong Zou, Xinzhu Wu, Jixiao Xu, Shuying Yi, Xianfeng Li, Yujian Biodivers Data J OMIC Data Paper Coccotorusbeijingensis Lin et Li, 1990 belongs to Coleoptera, Curculionidae, Curculioninae, Anthonomini. It is a herbivorous insect that damages Celtisbungeana Blume (Ulmaceae) by affecting branch growth. The mitochondrial genome of C.beijingensis was sequenced and annotated to better identify C.beijingensis and related species. The total length of the C.beijingensis mitochondrial genome was 17,071 bp, contained 37 typical genes (13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes) and two control regions (total length: 2,292 bp). Mitochondrial genome composition, nucleotide composition and codon usage are similar to those of other sequenced Curculionidae mitogenomes. All protein-coding genes initiated with ATN and TTG codons and ended with TAA, TAG or incomplete stop codons (TA, T). In addition, analyses of pairwise genetic distances between individual PCGs in Curculionidae species showed that ATP8 was the least conserved gene, while COI was the most conserved. Twenty-one transfer RNAs had typical cloverleaf structures, while trnS1 lacked dihydrouridine (DHU) arms. ML and BI analyses, based on 13 PCGs and two rRNAs from ten species of Curculionidae, strongly support the relationships between C.beijingensis and species of the genus Anthonomus: ((An.eugenii+ An.rubi) + C.beijingensis + (An.pomorum+ An.rectirostris)) (BS = 100; PP = 1). Our phylogenetic analyses could mean that the genus Coccotorus should be sunk under Anthonomus, but more taxon sampling is needed to verify this result. Pensoft Publishers 2022-12-09 /pmc/articles/PMC9836419/ /pubmed/36761507 http://dx.doi.org/10.3897/BDJ.10.e95935 Text en Sai Jiang, Lina Jiang, Ran Li, Hui Gao, Aijing Zhang, Yurong Yan, Xinzhu Zou, Jixiao Wu, Shuying Xu, Xianfeng Yi, Yujian Li https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle OMIC Data Paper
Jiang, Sai
Jiang, Lina
Li, Ran
Gao, Hui
Zhang, Aijing
Yan, Yurong
Zou, Xinzhu
Wu, Jixiao
Xu, Shuying
Yi, Xianfeng
Li, Yujian
The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications
title The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications
title_full The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications
title_fullStr The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications
title_full_unstemmed The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications
title_short The complete mitochondrial genome of Coccotorusbeijingensis Lin et Li, 1990 (Coleoptera, Curculionidae, Curculioninae, Anthonomini) and its phylogenetic implications
title_sort complete mitochondrial genome of coccotorusbeijingensis lin et li, 1990 (coleoptera, curculionidae, curculioninae, anthonomini) and its phylogenetic implications
topic OMIC Data Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9836419/
https://www.ncbi.nlm.nih.gov/pubmed/36761507
http://dx.doi.org/10.3897/BDJ.10.e95935
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