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Phototank setup and focus stack imaging method for reptile and amphibian specimens (Amphibia, Reptilia)

Fluid-preserved reptile and amphibian specimens are challenging to photograph with traditional methods due to their complex three-dimensional forms and reflective surfaces when removed from solution. An effective approach to counteract these issues involves combining focus stack photography with the...

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Autor principal: Braker, Emily M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9836466/
https://www.ncbi.nlm.nih.gov/pubmed/36761107
http://dx.doi.org/10.3897/zookeys.1134.96103
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author Braker, Emily M.
author_facet Braker, Emily M.
author_sort Braker, Emily M.
collection PubMed
description Fluid-preserved reptile and amphibian specimens are challenging to photograph with traditional methods due to their complex three-dimensional forms and reflective surfaces when removed from solution. An effective approach to counteract these issues involves combining focus stack photography with the use of a photo immersion tank. Imaging specimens beneath a layer of preservative fluid eliminates glare and risk of specimen desiccation, while focus stacking produces sharp detail through merging multiple photographs taken at successive focal steps to create a composite image with an extended depth of field. This paper describes the wet imaging components and focus stack photography workflow developed while conducting a large-scale digitization project for targeted reptile and amphibian specimens housed in the University of Colorado Museum of Natural History Herpetology Collection. This methodology can be implemented in other collections settings and adapted for use with fluid-preserved specimen types across the Tree of Life to generate high-quality, taxonomically informative images for use in documenting biodiversity, remote examination of fine traits, inclusion in publications, and educational applications.
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spelling pubmed-98364662023-02-08 Phototank setup and focus stack imaging method for reptile and amphibian specimens (Amphibia, Reptilia) Braker, Emily M. Zookeys Research Article Fluid-preserved reptile and amphibian specimens are challenging to photograph with traditional methods due to their complex three-dimensional forms and reflective surfaces when removed from solution. An effective approach to counteract these issues involves combining focus stack photography with the use of a photo immersion tank. Imaging specimens beneath a layer of preservative fluid eliminates glare and risk of specimen desiccation, while focus stacking produces sharp detail through merging multiple photographs taken at successive focal steps to create a composite image with an extended depth of field. This paper describes the wet imaging components and focus stack photography workflow developed while conducting a large-scale digitization project for targeted reptile and amphibian specimens housed in the University of Colorado Museum of Natural History Herpetology Collection. This methodology can be implemented in other collections settings and adapted for use with fluid-preserved specimen types across the Tree of Life to generate high-quality, taxonomically informative images for use in documenting biodiversity, remote examination of fine traits, inclusion in publications, and educational applications. Pensoft Publishers 2022-12-09 /pmc/articles/PMC9836466/ /pubmed/36761107 http://dx.doi.org/10.3897/zookeys.1134.96103 Text en Emily M. Braker https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Braker, Emily M.
Phototank setup and focus stack imaging method for reptile and amphibian specimens (Amphibia, Reptilia)
title Phototank setup and focus stack imaging method for reptile and amphibian specimens (Amphibia, Reptilia)
title_full Phototank setup and focus stack imaging method for reptile and amphibian specimens (Amphibia, Reptilia)
title_fullStr Phototank setup and focus stack imaging method for reptile and amphibian specimens (Amphibia, Reptilia)
title_full_unstemmed Phototank setup and focus stack imaging method for reptile and amphibian specimens (Amphibia, Reptilia)
title_short Phototank setup and focus stack imaging method for reptile and amphibian specimens (Amphibia, Reptilia)
title_sort phototank setup and focus stack imaging method for reptile and amphibian specimens (amphibia, reptilia)
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9836466/
https://www.ncbi.nlm.nih.gov/pubmed/36761107
http://dx.doi.org/10.3897/zookeys.1134.96103
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