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Software infrastructure and data pipelines established for technical interoperability within a cross-border cooperation for the flora of the Bohemian Forest

BACKGROUND: The timely and geographical resolutions, as well as the quantity and taxon concepts of records on the occurrence of plants near national borders is often ambiguous. This is due to the regional focus and different approaches of the contributing national and regional databases and networks...

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Autores principales: Novotný, Petr, Seifert, Stefan, Rohn, Martin, Diewald, Wolfgang, Štech, Milan, Triebel, Dagmar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9836605/
https://www.ncbi.nlm.nih.gov/pubmed/36761603
http://dx.doi.org/10.3897/BDJ.10.e87254
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author Novotný, Petr
Seifert, Stefan
Rohn, Martin
Diewald, Wolfgang
Štech, Milan
Triebel, Dagmar
author_facet Novotný, Petr
Seifert, Stefan
Rohn, Martin
Diewald, Wolfgang
Štech, Milan
Triebel, Dagmar
author_sort Novotný, Petr
collection PubMed
description BACKGROUND: The timely and geographical resolutions, as well as the quantity and taxon concepts of records on the occurrence of plants near national borders is often ambiguous. This is due to the regional focus and different approaches of the contributing national and regional databases and networks of the neighbouring countries. Careful data transformation between national data providers is essential for understanding distribution patterns and its dynamics for organisms in areas along the national borders. Sharing occurrence data through the international data aggregator Global Biodiversity Information Facility (GBIF) is also complicated and has to consider that the underlying taxonomic concept and geographic information system of each single GBIF dataset might be different. In addition, some regional data providers have a restrictive (non-cc) licensing policy which does not allow data publication via the GBIF network. Therefore, it is necessary to investigate new ways to make data fit for use for a better and comprehensive understanding of the Flora of the Bohemian Forest. NEW INFORMATION: In this paper, we present a bilateral technical interoperability solution for vascular plant occurrence data for the area between the Czech Republic and Bavaria. We describe the initial state of data providers in both countries and the factual and technical challenges in finding a sustainable concept to establish mutual data sharing. The resulting solution for a functional infrastructure and an agreed data pipeline is described in a step-by-step approach. The new distributed infrastructure allows botanists and other stakeholders from both countries to work within the cross-border context of historical and current plants' distribution.
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spelling pubmed-98366052023-02-08 Software infrastructure and data pipelines established for technical interoperability within a cross-border cooperation for the flora of the Bohemian Forest Novotný, Petr Seifert, Stefan Rohn, Martin Diewald, Wolfgang Štech, Milan Triebel, Dagmar Biodivers Data J Software Description BACKGROUND: The timely and geographical resolutions, as well as the quantity and taxon concepts of records on the occurrence of plants near national borders is often ambiguous. This is due to the regional focus and different approaches of the contributing national and regional databases and networks of the neighbouring countries. Careful data transformation between national data providers is essential for understanding distribution patterns and its dynamics for organisms in areas along the national borders. Sharing occurrence data through the international data aggregator Global Biodiversity Information Facility (GBIF) is also complicated and has to consider that the underlying taxonomic concept and geographic information system of each single GBIF dataset might be different. In addition, some regional data providers have a restrictive (non-cc) licensing policy which does not allow data publication via the GBIF network. Therefore, it is necessary to investigate new ways to make data fit for use for a better and comprehensive understanding of the Flora of the Bohemian Forest. NEW INFORMATION: In this paper, we present a bilateral technical interoperability solution for vascular plant occurrence data for the area between the Czech Republic and Bavaria. We describe the initial state of data providers in both countries and the factual and technical challenges in finding a sustainable concept to establish mutual data sharing. The resulting solution for a functional infrastructure and an agreed data pipeline is described in a step-by-step approach. The new distributed infrastructure allows botanists and other stakeholders from both countries to work within the cross-border context of historical and current plants' distribution. Pensoft Publishers 2022-10-14 /pmc/articles/PMC9836605/ /pubmed/36761603 http://dx.doi.org/10.3897/BDJ.10.e87254 Text en Petr Novotný, Stefan Seifert, Martin Rohn, Wolfgang Diewald, Milan Štech, Dagmar Triebel https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Software Description
Novotný, Petr
Seifert, Stefan
Rohn, Martin
Diewald, Wolfgang
Štech, Milan
Triebel, Dagmar
Software infrastructure and data pipelines established for technical interoperability within a cross-border cooperation for the flora of the Bohemian Forest
title Software infrastructure and data pipelines established for technical interoperability within a cross-border cooperation for the flora of the Bohemian Forest
title_full Software infrastructure and data pipelines established for technical interoperability within a cross-border cooperation for the flora of the Bohemian Forest
title_fullStr Software infrastructure and data pipelines established for technical interoperability within a cross-border cooperation for the flora of the Bohemian Forest
title_full_unstemmed Software infrastructure and data pipelines established for technical interoperability within a cross-border cooperation for the flora of the Bohemian Forest
title_short Software infrastructure and data pipelines established for technical interoperability within a cross-border cooperation for the flora of the Bohemian Forest
title_sort software infrastructure and data pipelines established for technical interoperability within a cross-border cooperation for the flora of the bohemian forest
topic Software Description
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9836605/
https://www.ncbi.nlm.nih.gov/pubmed/36761603
http://dx.doi.org/10.3897/BDJ.10.e87254
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