Cargando…
A noval prognostic signature of the N7-methylguanosine (m7G)-related miRNA in lung adenocarcinoma
BACKGROUND: Lung adenocarcinoma (LUAD) is characterized by high morbidity and mortality rates and poor prognosis. N7-methylguanosine play an increasingly vital role in lung adenocarcinoma. However, the prognostic value of N7-methylguanosine related-miRNAs in lung adenocarcinoma remains unclear. METH...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9838007/ https://www.ncbi.nlm.nih.gov/pubmed/36635678 http://dx.doi.org/10.1186/s12890-022-02290-7 |
_version_ | 1784869192860696576 |
---|---|
author | Duan, Han-ping Yan, Jian-hui Nie, Lin Wang, Ye Xie, Hui |
author_facet | Duan, Han-ping Yan, Jian-hui Nie, Lin Wang, Ye Xie, Hui |
author_sort | Duan, Han-ping |
collection | PubMed |
description | BACKGROUND: Lung adenocarcinoma (LUAD) is characterized by high morbidity and mortality rates and poor prognosis. N7-methylguanosine play an increasingly vital role in lung adenocarcinoma. However, the prognostic value of N7-methylguanosine related-miRNAs in lung adenocarcinoma remains unclear. METHODS: In the study, the mRNA and miRNA expression profiles and corresponding clinical informations were downloaded from the public database. The prognostic signature was built using least absolute shrinkage and selection operator Cox analysis. The Kaplan–Meier method was used to compare survival outcomes between the high- and low-risk groups. Signatures for the development of lung adenocarcinoma were tested using univariate and multivariate Cox regression models. Single-sample gene set enrichment analysis was used to determine the immune cell infiltration score. First, we predicted METTL1 and WDR4 chemosensitivities based on a public pharmacogenomics database. The area under the receiver operating characteristic curve showed that the performance of signature in 1-,3-, and 5-year survival predictions were 0.68, 0.65, and 0.683, respectively. RESULTS: We established a novel prognostic signature consisting of 9 N7-Methylguanosine related miRNAs using least absolute shrinkage and selection operator Cox analysis. Patients in the high-risk group had shorter survival times than those in the low-risk group did. The calibration curves at 1, 3, and 5-year also illustrate the high predictive power of the structure. Signature was corrected using the Toumor stage. The expression levels of METTL1 and WDR4 significantly correlated with the sensitivity of cancer cells to antitumor drugs. CONCLUSIONS: A novel signature constructed using 9 N7-methylguanosine related-miRNAs can be used for prognostic prediction. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12890-022-02290-7. |
format | Online Article Text |
id | pubmed-9838007 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-98380072023-01-14 A noval prognostic signature of the N7-methylguanosine (m7G)-related miRNA in lung adenocarcinoma Duan, Han-ping Yan, Jian-hui Nie, Lin Wang, Ye Xie, Hui BMC Pulm Med Research BACKGROUND: Lung adenocarcinoma (LUAD) is characterized by high morbidity and mortality rates and poor prognosis. N7-methylguanosine play an increasingly vital role in lung adenocarcinoma. However, the prognostic value of N7-methylguanosine related-miRNAs in lung adenocarcinoma remains unclear. METHODS: In the study, the mRNA and miRNA expression profiles and corresponding clinical informations were downloaded from the public database. The prognostic signature was built using least absolute shrinkage and selection operator Cox analysis. The Kaplan–Meier method was used to compare survival outcomes between the high- and low-risk groups. Signatures for the development of lung adenocarcinoma were tested using univariate and multivariate Cox regression models. Single-sample gene set enrichment analysis was used to determine the immune cell infiltration score. First, we predicted METTL1 and WDR4 chemosensitivities based on a public pharmacogenomics database. The area under the receiver operating characteristic curve showed that the performance of signature in 1-,3-, and 5-year survival predictions were 0.68, 0.65, and 0.683, respectively. RESULTS: We established a novel prognostic signature consisting of 9 N7-Methylguanosine related miRNAs using least absolute shrinkage and selection operator Cox analysis. Patients in the high-risk group had shorter survival times than those in the low-risk group did. The calibration curves at 1, 3, and 5-year also illustrate the high predictive power of the structure. Signature was corrected using the Toumor stage. The expression levels of METTL1 and WDR4 significantly correlated with the sensitivity of cancer cells to antitumor drugs. CONCLUSIONS: A novel signature constructed using 9 N7-methylguanosine related-miRNAs can be used for prognostic prediction. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12890-022-02290-7. BioMed Central 2023-01-12 /pmc/articles/PMC9838007/ /pubmed/36635678 http://dx.doi.org/10.1186/s12890-022-02290-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Duan, Han-ping Yan, Jian-hui Nie, Lin Wang, Ye Xie, Hui A noval prognostic signature of the N7-methylguanosine (m7G)-related miRNA in lung adenocarcinoma |
title | A noval prognostic signature of the N7-methylguanosine (m7G)-related miRNA in lung adenocarcinoma |
title_full | A noval prognostic signature of the N7-methylguanosine (m7G)-related miRNA in lung adenocarcinoma |
title_fullStr | A noval prognostic signature of the N7-methylguanosine (m7G)-related miRNA in lung adenocarcinoma |
title_full_unstemmed | A noval prognostic signature of the N7-methylguanosine (m7G)-related miRNA in lung adenocarcinoma |
title_short | A noval prognostic signature of the N7-methylguanosine (m7G)-related miRNA in lung adenocarcinoma |
title_sort | noval prognostic signature of the n7-methylguanosine (m7g)-related mirna in lung adenocarcinoma |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9838007/ https://www.ncbi.nlm.nih.gov/pubmed/36635678 http://dx.doi.org/10.1186/s12890-022-02290-7 |
work_keys_str_mv | AT duanhanping anovalprognosticsignatureofthen7methylguanosinem7grelatedmirnainlungadenocarcinoma AT yanjianhui anovalprognosticsignatureofthen7methylguanosinem7grelatedmirnainlungadenocarcinoma AT nielin anovalprognosticsignatureofthen7methylguanosinem7grelatedmirnainlungadenocarcinoma AT wangye anovalprognosticsignatureofthen7methylguanosinem7grelatedmirnainlungadenocarcinoma AT xiehui anovalprognosticsignatureofthen7methylguanosinem7grelatedmirnainlungadenocarcinoma AT duanhanping novalprognosticsignatureofthen7methylguanosinem7grelatedmirnainlungadenocarcinoma AT yanjianhui novalprognosticsignatureofthen7methylguanosinem7grelatedmirnainlungadenocarcinoma AT nielin novalprognosticsignatureofthen7methylguanosinem7grelatedmirnainlungadenocarcinoma AT wangye novalprognosticsignatureofthen7methylguanosinem7grelatedmirnainlungadenocarcinoma AT xiehui novalprognosticsignatureofthen7methylguanosinem7grelatedmirnainlungadenocarcinoma |