Cargando…

Pressure, motion, and conformational entropy in molecular recognition by proteins

The thermodynamics of molecular recognition by proteins is a central determinant of complex biochemistry. For over a half-century, detailed cryogenic structures have provided deep insight into the energetic contributions to ligand binding by proteins. More recently, a dynamical proxy based on NMR-re...

Descripción completa

Detalles Bibliográficos
Autores principales:	Caro, José A., Valentine, Kathleen G., Cole, Taylor R., Wand, A. Joshua
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2022
Materias:	Report
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9840116/ https://www.ncbi.nlm.nih.gov/pubmed/36647534 http://dx.doi.org/10.1016/j.bpr.2022.100098

Ejemplares similares

The role of conformational entropy in molecular recognition by calmodulin
por: Marlow, Michael S., et al.
Publicado: (2010)

Protein conformational entropy is not slaved to water
por: Marques, Bryan S., et al.
Publicado: (2020)

Membrane Proteins Have Distinct Fast Internal Motion and Residual Conformational Entropy
por: O'Brien, Evan S., et al.
Publicado: (2020)

On Side-Chain Conformational Entropy of Proteins
por: Zhang, Jinfeng, et al.
Publicado: (2006)

Protein Flexibility and Conformational Entropy in Ligand Design Targeting the Carbohydrate Recognition Domain of Galectin-3
por: Diehl, Carl, et al.
Publicado: (2010)

Conformational Entropy from Restricted Bond-Vector Motion in Proteins: The Symmetry of the Local Restrictions and Relation to NMR Relaxation
por: Mendelman, Netanel, et al.
Publicado: (2020)

Understanding biomolecular motion, recognition, and allostery by use of conformational ensembles
por: Fenwick, R. Bryn, et al.
Publicado: (2011)

Conformational Proofreading: The Impact of Conformational Changes on the Specificity of Molecular Recognition
por: Savir, Yonatan, et al.
Publicado: (2007)

Confusion matrix and minimum cross-entropy metrics based motion recognition system in the classroom
por: Wu, Ming-Te
Publicado: (2022)

Structural Analysis Reveals Conformational Plasticity in the Recognition of RNA 3′ Ends by the Human La Protein
por: Kotik-Kogan, Olga, et al.
Publicado: (2008)

β(2)-Adrenergic Ion-Channel Coupled Receptors as Conformational Motion Detectors
por: Caro, Lydia N., et al.
Publicado: (2011)

Conformational Entropy of Intrinsically Disordered Proteins from Amino Acid Triads
por: Baruah, Anupaul, et al.
Publicado: (2015)

Predicting protein ligand binding motions with the conformation explorer
por: Flores, Samuel C, et al.
Publicado: (2011)

Conformational Ensembles Exhibit Extensive Molecular Recognition Features
por: Cukier, Robert I.
Publicado: (2018)

Exploring Large Domain Motions in Proteins Using Atomistic Molecular Dynamics with Enhanced Conformational Sampling
por: Dokainish, Hisham M., et al.
Publicado: (2020)

The role of RNA conformation in RNA-protein recognition
por: Kligun, Efrat, et al.
Publicado: (2015)

Protein crystal lattices are dynamic assemblies: the role of conformational entropy in the protein condensed phase
por: Dimova, Margarita, et al.
Publicado: (2018)

In Silico Investigation of Conformational Motions in Superfamily 2 Helicase Proteins
por: Flechsig, Holger, et al.
Publicado: (2011)

Entropy-Based Video Steganalysis of Motion Vectors
por: Sadat, Elaheh Sadat, et al.
Publicado: (2018)

Slow conformational exchange and overall rocking motion in ubiquitin protein crystals
por: Kurauskas, Vilius, et al.
Publicado: (2017)

DNA mismatches reveal conformational penalties in protein-DNA recognition
por: Afek, Ariel, et al.
Publicado: (2020)

Stochastic-Aware Conformance Checking: An Entropy-Based Approach
por: Leemans, Sander J. J., et al.
Publicado: (2020)

Ubiquitin chain conformation regulates recognition and activity of interacting proteins
por: Ye, Yu, et al.
Publicado: (2012)

Optimized Reverse Micelle Surfactant System for High-Resolution NMR Spectroscopy of Encapsulated Proteins and Nucleic Acids Dissolved in Low Viscosity Fluids
por: Dodevski, Igor, et al.
Publicado: (2014)

Co-Training for Visual Object Recognition Based on Self-Supervised Models Using a Cross-Entropy Regularization
por: Díaz, Gabriel, et al.
Publicado: (2021)

Approximation and entropy numbers of Volterra operators with application to Brownian motion
por: A, Lifshits Mikhail, et al.
Publicado: (2002)

Human Motion State Recognition Based on Flexible, Wearable Capacitive Pressure Sensors
por: Yu, Qingyang, et al.
Publicado: (2021)

Response to comment on ‘Protein crystal lattices are dynamic assemblies: the role of conformational entropy in the protein condensed phase’
por: Dimova, Margarita, et al.
Publicado: (2018)

Comment on the article ‘Protein crystal lattices are dynamic assemblies: the role of conformational entropy in the protein condensed phase’
por: Nespolo, Massimo
Publicado: (2018)

The origin of jerky dislocation motion in high-entropy alloys
por: Utt, Daniel, et al.
Publicado: (2022)

Mixed mechanism of conformational selection and induced fit as a molecular recognition process in the calreticulin family of proteins
por: Mamidi, Ashalatha Sreshty, et al.
Publicado: (2022)

Globally correlated conformational entropy underlies positive and negative cooperativity in a kinase’s enzymatic cycle
por: Wang, Yingjie, et al.
Publicado: (2019)

Entropy as an indicator of cerebral perfusion in patients with increased intracranial pressure
por: Khan, James, et al.
Publicado: (2014)

Reverse Micelles As a Platform for Dynamic Nuclear Polarization in Solution NMR of Proteins
por: Valentine, Kathleen G., et al.
Publicado: (2014)

Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition
por: Hayashi, Tomohiko, et al.
Publicado: (2014)

Correlation between the binding affinity and the conformational entropy of nanobody SARS-CoV-2 spike protein complexes
por: Mikolajek, Halina, et al.
Publicado: (2022)

Conformational entropy of a polymer chain grafted to rough surfaces
por: Nowicki, Waldemar, et al.
Publicado: (2012)

Conformational Entropy Contributions to the Glass Temperature of Blends of Miscible Polymers
por: Schneider, Hans Adam
Publicado: (1997)

Conformational Entropy as a Potential Liability of Computationally Designed Antibodies
por: Löhr, Thomas, et al.
Publicado: (2022)

Elucidating Molecular Motion through Structural and Dynamic Filters of Energy-Minimized Conformer Ensembles
por: Emani, Prashant S., et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_2ptcu2bs5lbmr7q756sadjup4f