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A genome-wide association study identifies distinct variants associated with pulmonary function among European and African ancestries from the UK Biobank

Pulmonary function is an indicator of well-being, and pulmonary pathologies are the third major cause of death worldwide. We analysed the UK Biobank genome-wide association summary statistics of pulmonary function for Europeans and individuals of recent African descent to identify variants associate...

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Autores principales: Sinkala, Musalula, Elsheikh, Samar S. M., Mbiyavanga, Mamana, Cullinan, Joshua, Mulder, Nicola J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9840173/
https://www.ncbi.nlm.nih.gov/pubmed/36641522
http://dx.doi.org/10.1038/s42003-023-04443-8
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author Sinkala, Musalula
Elsheikh, Samar S. M.
Mbiyavanga, Mamana
Cullinan, Joshua
Mulder, Nicola J.
author_facet Sinkala, Musalula
Elsheikh, Samar S. M.
Mbiyavanga, Mamana
Cullinan, Joshua
Mulder, Nicola J.
author_sort Sinkala, Musalula
collection PubMed
description Pulmonary function is an indicator of well-being, and pulmonary pathologies are the third major cause of death worldwide. We analysed the UK Biobank genome-wide association summary statistics of pulmonary function for Europeans and individuals of recent African descent to identify variants associated with the trait in the two ancestries. Here, we show 627 variants in Europeans and 3 in Africans associated with three pulmonary function parameters. In addition to the 110 variants in Europeans previously reported to be associated with phenotypes related to pulmonary function, we identify 279 novel loci, including an ISX intergenic variant rs369476290 on chromosome 22 in Africans. Remarkably, we find no shared variants among Africans and Europeans. Furthermore, enrichment analyses of variants separately for each ancestry background reveal significant enrichment for terms related to pulmonary phenotypes in Europeans but not Africans. Further analysis of studies of pulmonary phenotypes reveals that individuals of European background are disproportionally overrepresented in datasets compared to Africans, with the gap widening over the past five years. Our findings extend our understanding of the different variants that modify the pulmonary function in Africans and Europeans, a promising finding for future GWASs and medical studies.
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spelling pubmed-98401732023-01-16 A genome-wide association study identifies distinct variants associated with pulmonary function among European and African ancestries from the UK Biobank Sinkala, Musalula Elsheikh, Samar S. M. Mbiyavanga, Mamana Cullinan, Joshua Mulder, Nicola J. Commun Biol Article Pulmonary function is an indicator of well-being, and pulmonary pathologies are the third major cause of death worldwide. We analysed the UK Biobank genome-wide association summary statistics of pulmonary function for Europeans and individuals of recent African descent to identify variants associated with the trait in the two ancestries. Here, we show 627 variants in Europeans and 3 in Africans associated with three pulmonary function parameters. In addition to the 110 variants in Europeans previously reported to be associated with phenotypes related to pulmonary function, we identify 279 novel loci, including an ISX intergenic variant rs369476290 on chromosome 22 in Africans. Remarkably, we find no shared variants among Africans and Europeans. Furthermore, enrichment analyses of variants separately for each ancestry background reveal significant enrichment for terms related to pulmonary phenotypes in Europeans but not Africans. Further analysis of studies of pulmonary phenotypes reveals that individuals of European background are disproportionally overrepresented in datasets compared to Africans, with the gap widening over the past five years. Our findings extend our understanding of the different variants that modify the pulmonary function in Africans and Europeans, a promising finding for future GWASs and medical studies. Nature Publishing Group UK 2023-01-14 /pmc/articles/PMC9840173/ /pubmed/36641522 http://dx.doi.org/10.1038/s42003-023-04443-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Sinkala, Musalula
Elsheikh, Samar S. M.
Mbiyavanga, Mamana
Cullinan, Joshua
Mulder, Nicola J.
A genome-wide association study identifies distinct variants associated with pulmonary function among European and African ancestries from the UK Biobank
title A genome-wide association study identifies distinct variants associated with pulmonary function among European and African ancestries from the UK Biobank
title_full A genome-wide association study identifies distinct variants associated with pulmonary function among European and African ancestries from the UK Biobank
title_fullStr A genome-wide association study identifies distinct variants associated with pulmonary function among European and African ancestries from the UK Biobank
title_full_unstemmed A genome-wide association study identifies distinct variants associated with pulmonary function among European and African ancestries from the UK Biobank
title_short A genome-wide association study identifies distinct variants associated with pulmonary function among European and African ancestries from the UK Biobank
title_sort genome-wide association study identifies distinct variants associated with pulmonary function among european and african ancestries from the uk biobank
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9840173/
https://www.ncbi.nlm.nih.gov/pubmed/36641522
http://dx.doi.org/10.1038/s42003-023-04443-8
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