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Red Flag/Blue Flag visualization of a common CNN for text classification
A shallow convolutional neural network (CNN), TextCNN, has become nearly ubiquitous for classification among clinical and medical text. This research presents a novel eXplainable-AI (X-AI) software, Red Flag/Blue Flag (RFBF), designed for binary classification with TextCNN. RFBF visualizes each conv...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9841396/ https://www.ncbi.nlm.nih.gov/pubmed/36660449 http://dx.doi.org/10.1093/jamiaopen/ooac112 |
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author | Del Gaizo, John Obeid, Jihad S Catchpole, Kenneth R Alekseyenko, Alexander V |
author_facet | Del Gaizo, John Obeid, Jihad S Catchpole, Kenneth R Alekseyenko, Alexander V |
author_sort | Del Gaizo, John |
collection | PubMed |
description | A shallow convolutional neural network (CNN), TextCNN, has become nearly ubiquitous for classification among clinical and medical text. This research presents a novel eXplainable-AI (X-AI) software, Red Flag/Blue Flag (RFBF), designed for binary classification with TextCNN. RFBF visualizes each convolutional filter’s discriminative capability. This is a more informative approach than direct assessment of logit contribution, features that overfit to train set nuances on smaller datasets may indiscriminately activate large logits on validation samples from both classes. RFBF enables model diagnosis, term feature verification, and overfit prevention. We present 3 use cases of (1) filter consistency assessment; (2) predictive performance improvement; and (3) estimation of information leakage between train and holdout sets. The use cases derive from experiments on TextCNN for binary prediction of surgical misadventure outcomes from physician-authored operative notes. Due to TextCNN’s prevalence, this X-AI can benefit clinical text research, and hence improve patient outcomes. |
format | Online Article Text |
id | pubmed-9841396 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-98413962023-01-18 Red Flag/Blue Flag visualization of a common CNN for text classification Del Gaizo, John Obeid, Jihad S Catchpole, Kenneth R Alekseyenko, Alexander V JAMIA Open Application Notes A shallow convolutional neural network (CNN), TextCNN, has become nearly ubiquitous for classification among clinical and medical text. This research presents a novel eXplainable-AI (X-AI) software, Red Flag/Blue Flag (RFBF), designed for binary classification with TextCNN. RFBF visualizes each convolutional filter’s discriminative capability. This is a more informative approach than direct assessment of logit contribution, features that overfit to train set nuances on smaller datasets may indiscriminately activate large logits on validation samples from both classes. RFBF enables model diagnosis, term feature verification, and overfit prevention. We present 3 use cases of (1) filter consistency assessment; (2) predictive performance improvement; and (3) estimation of information leakage between train and holdout sets. The use cases derive from experiments on TextCNN for binary prediction of surgical misadventure outcomes from physician-authored operative notes. Due to TextCNN’s prevalence, this X-AI can benefit clinical text research, and hence improve patient outcomes. Oxford University Press 2023-01-16 /pmc/articles/PMC9841396/ /pubmed/36660449 http://dx.doi.org/10.1093/jamiaopen/ooac112 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of the American Medical Informatics Association. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Application Notes Del Gaizo, John Obeid, Jihad S Catchpole, Kenneth R Alekseyenko, Alexander V Red Flag/Blue Flag visualization of a common CNN for text classification |
title | Red Flag/Blue Flag visualization of a common CNN for text classification |
title_full | Red Flag/Blue Flag visualization of a common CNN for text classification |
title_fullStr | Red Flag/Blue Flag visualization of a common CNN for text classification |
title_full_unstemmed | Red Flag/Blue Flag visualization of a common CNN for text classification |
title_short | Red Flag/Blue Flag visualization of a common CNN for text classification |
title_sort | red flag/blue flag visualization of a common cnn for text classification |
topic | Application Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9841396/ https://www.ncbi.nlm.nih.gov/pubmed/36660449 http://dx.doi.org/10.1093/jamiaopen/ooac112 |
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