Cargando…

A novel platform using homobifunctional hydrazide for enrichment and isolation of urinary circulating RNAs

Changes in specific circulating RNA (circRNA) expressions can serve as diagnostic noninvasive biomarkers for prostate cancer (PCa). However, there are still unmet needs, such as unclear types and roles of circRNAs, PCa detection in benign prostatic hyperplasia (BPH) by unstandardized methods, and li...

Descripción completa

Detalles Bibliográficos
Autores principales: Koo, Bonhan, Kim, Yunlim, Jang, Yoon Ok, Liu, Huifang, Kim, Myoung Gyu, Lee, Hyo Joo, Woo, Myung Kyun, Kim, Choung‐Soo, Shin, Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9842063/
https://www.ncbi.nlm.nih.gov/pubmed/36684108
http://dx.doi.org/10.1002/btm2.10348
_version_ 1784870036220936192
author Koo, Bonhan
Kim, Yunlim
Jang, Yoon Ok
Liu, Huifang
Kim, Myoung Gyu
Lee, Hyo Joo
Woo, Myung Kyun
Kim, Choung‐Soo
Shin, Yong
author_facet Koo, Bonhan
Kim, Yunlim
Jang, Yoon Ok
Liu, Huifang
Kim, Myoung Gyu
Lee, Hyo Joo
Woo, Myung Kyun
Kim, Choung‐Soo
Shin, Yong
author_sort Koo, Bonhan
collection PubMed
description Changes in specific circulating RNA (circRNA) expressions can serve as diagnostic noninvasive biomarkers for prostate cancer (PCa). However, there are still unmet needs, such as unclear types and roles of circRNAs, PCa detection in benign prostatic hyperplasia (BPH) by unstandardized methods, and limitations of sample volume capacity and low circRNA concentrations. This study reports a simple and rapid circRNA enrichment and isolation technique named “HAZIS‐CirR” for the analysis of urinary circRNAs. The method utilizes homobifunctional hydrazides with amine‐modified zeolite and polyvinylidene fluoride (PVDF) syringe filtration for combining electrostatic and covalent coupling and size‐based filtration, and it offers instrument‐free isolation of circRNAs in 20 min without volume limitation, thermoregulation, and lysis. HAZIS‐CirR has high capture efficiency (82.03%–92.38%) and a 10‐fold more sensitive detection limit (20 fM) than before enrichment (200 fM). The clinical utility of HAZIS‐CirR is confirmed by analyzing circulating mRNAs and circulating miRNAs in 89 urine samples. Furthermore, three miRNA panels that differentiate PCa from BPH and control, PCa from control, and BPH from control, respectively, are established by comparing miRNA levels. HAZIS‐CirR will be used as an optimal and established method for the enrichment and isolation of circRNAs as diagnostic, prognostic, and predictive biomarkers in human cancers.
format Online
Article
Text
id pubmed-9842063
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher John Wiley & Sons, Inc.
record_format MEDLINE/PubMed
spelling pubmed-98420632023-01-19 A novel platform using homobifunctional hydrazide for enrichment and isolation of urinary circulating RNAs Koo, Bonhan Kim, Yunlim Jang, Yoon Ok Liu, Huifang Kim, Myoung Gyu Lee, Hyo Joo Woo, Myung Kyun Kim, Choung‐Soo Shin, Yong Bioeng Transl Med Research Articles Changes in specific circulating RNA (circRNA) expressions can serve as diagnostic noninvasive biomarkers for prostate cancer (PCa). However, there are still unmet needs, such as unclear types and roles of circRNAs, PCa detection in benign prostatic hyperplasia (BPH) by unstandardized methods, and limitations of sample volume capacity and low circRNA concentrations. This study reports a simple and rapid circRNA enrichment and isolation technique named “HAZIS‐CirR” for the analysis of urinary circRNAs. The method utilizes homobifunctional hydrazides with amine‐modified zeolite and polyvinylidene fluoride (PVDF) syringe filtration for combining electrostatic and covalent coupling and size‐based filtration, and it offers instrument‐free isolation of circRNAs in 20 min without volume limitation, thermoregulation, and lysis. HAZIS‐CirR has high capture efficiency (82.03%–92.38%) and a 10‐fold more sensitive detection limit (20 fM) than before enrichment (200 fM). The clinical utility of HAZIS‐CirR is confirmed by analyzing circulating mRNAs and circulating miRNAs in 89 urine samples. Furthermore, three miRNA panels that differentiate PCa from BPH and control, PCa from control, and BPH from control, respectively, are established by comparing miRNA levels. HAZIS‐CirR will be used as an optimal and established method for the enrichment and isolation of circRNAs as diagnostic, prognostic, and predictive biomarkers in human cancers. John Wiley & Sons, Inc. 2022-06-03 /pmc/articles/PMC9842063/ /pubmed/36684108 http://dx.doi.org/10.1002/btm2.10348 Text en © 2022 The Authors. Bioengineering & Translational Medicine published by Wiley Periodicals LLC on behalf of American Institute of Chemical Engineers. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Koo, Bonhan
Kim, Yunlim
Jang, Yoon Ok
Liu, Huifang
Kim, Myoung Gyu
Lee, Hyo Joo
Woo, Myung Kyun
Kim, Choung‐Soo
Shin, Yong
A novel platform using homobifunctional hydrazide for enrichment and isolation of urinary circulating RNAs
title A novel platform using homobifunctional hydrazide for enrichment and isolation of urinary circulating RNAs
title_full A novel platform using homobifunctional hydrazide for enrichment and isolation of urinary circulating RNAs
title_fullStr A novel platform using homobifunctional hydrazide for enrichment and isolation of urinary circulating RNAs
title_full_unstemmed A novel platform using homobifunctional hydrazide for enrichment and isolation of urinary circulating RNAs
title_short A novel platform using homobifunctional hydrazide for enrichment and isolation of urinary circulating RNAs
title_sort novel platform using homobifunctional hydrazide for enrichment and isolation of urinary circulating rnas
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9842063/
https://www.ncbi.nlm.nih.gov/pubmed/36684108
http://dx.doi.org/10.1002/btm2.10348
work_keys_str_mv AT koobonhan anovelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT kimyunlim anovelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT jangyoonok anovelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT liuhuifang anovelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT kimmyounggyu anovelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT leehyojoo anovelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT woomyungkyun anovelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT kimchoungsoo anovelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT shinyong anovelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT koobonhan novelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT kimyunlim novelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT jangyoonok novelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT liuhuifang novelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT kimmyounggyu novelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT leehyojoo novelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT woomyungkyun novelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT kimchoungsoo novelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas
AT shinyong novelplatformusinghomobifunctionalhydrazideforenrichmentandisolationofurinarycirculatingrnas