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A deep learning based dual encoder–decoder framework for anatomical structure segmentation in chest X-ray images

Automated multi-organ segmentation plays an essential part in the computer-aided diagnostic (CAD) of chest X-ray fluoroscopy. However, developing a CAD system for the anatomical structure segmentation remains challenging due to several indistinct structures, variations in the anatomical structure sh...

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Autores principales: Ullah, Ihsan, Ali, Farman, Shah, Babar, El-Sappagh, Shaker, Abuhmed, Tamer, Park, Sang Hyun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9842654/
https://www.ncbi.nlm.nih.gov/pubmed/36646735
http://dx.doi.org/10.1038/s41598-023-27815-w
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author Ullah, Ihsan
Ali, Farman
Shah, Babar
El-Sappagh, Shaker
Abuhmed, Tamer
Park, Sang Hyun
author_facet Ullah, Ihsan
Ali, Farman
Shah, Babar
El-Sappagh, Shaker
Abuhmed, Tamer
Park, Sang Hyun
author_sort Ullah, Ihsan
collection PubMed
description Automated multi-organ segmentation plays an essential part in the computer-aided diagnostic (CAD) of chest X-ray fluoroscopy. However, developing a CAD system for the anatomical structure segmentation remains challenging due to several indistinct structures, variations in the anatomical structure shape among different individuals, the presence of medical tools, such as pacemakers and catheters, and various artifacts in the chest radiographic images. In this paper, we propose a robust deep learning segmentation framework for the anatomical structure in chest radiographs that utilizes a dual encoder–decoder convolutional neural network (CNN). The first network in the dual encoder–decoder structure effectively utilizes a pre-trained VGG19 as an encoder for the segmentation task. The pre-trained encoder output is fed into the squeeze-and-excitation (SE) to boost the network’s representation power, which enables it to perform dynamic channel-wise feature calibrations. The calibrated features are efficiently passed into the first decoder to generate the mask. We integrated the generated mask with the input image and passed it through a second encoder–decoder network with the recurrent residual blocks and an attention the gate module to capture the additional contextual features and improve the segmentation of the smaller regions. Three public chest X-ray datasets are used to evaluate the proposed method for multi-organs segmentation, such as the heart, lungs, and clavicles, and single-organ segmentation, which include only lungs. The results from the experiment show that our proposed technique outperformed the existing multi-class and single-class segmentation methods.
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spelling pubmed-98426542023-01-18 A deep learning based dual encoder–decoder framework for anatomical structure segmentation in chest X-ray images Ullah, Ihsan Ali, Farman Shah, Babar El-Sappagh, Shaker Abuhmed, Tamer Park, Sang Hyun Sci Rep Article Automated multi-organ segmentation plays an essential part in the computer-aided diagnostic (CAD) of chest X-ray fluoroscopy. However, developing a CAD system for the anatomical structure segmentation remains challenging due to several indistinct structures, variations in the anatomical structure shape among different individuals, the presence of medical tools, such as pacemakers and catheters, and various artifacts in the chest radiographic images. In this paper, we propose a robust deep learning segmentation framework for the anatomical structure in chest radiographs that utilizes a dual encoder–decoder convolutional neural network (CNN). The first network in the dual encoder–decoder structure effectively utilizes a pre-trained VGG19 as an encoder for the segmentation task. The pre-trained encoder output is fed into the squeeze-and-excitation (SE) to boost the network’s representation power, which enables it to perform dynamic channel-wise feature calibrations. The calibrated features are efficiently passed into the first decoder to generate the mask. We integrated the generated mask with the input image and passed it through a second encoder–decoder network with the recurrent residual blocks and an attention the gate module to capture the additional contextual features and improve the segmentation of the smaller regions. Three public chest X-ray datasets are used to evaluate the proposed method for multi-organs segmentation, such as the heart, lungs, and clavicles, and single-organ segmentation, which include only lungs. The results from the experiment show that our proposed technique outperformed the existing multi-class and single-class segmentation methods. Nature Publishing Group UK 2023-01-16 /pmc/articles/PMC9842654/ /pubmed/36646735 http://dx.doi.org/10.1038/s41598-023-27815-w Text en © The Author(s) 2023, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Ullah, Ihsan
Ali, Farman
Shah, Babar
El-Sappagh, Shaker
Abuhmed, Tamer
Park, Sang Hyun
A deep learning based dual encoder–decoder framework for anatomical structure segmentation in chest X-ray images
title A deep learning based dual encoder–decoder framework for anatomical structure segmentation in chest X-ray images
title_full A deep learning based dual encoder–decoder framework for anatomical structure segmentation in chest X-ray images
title_fullStr A deep learning based dual encoder–decoder framework for anatomical structure segmentation in chest X-ray images
title_full_unstemmed A deep learning based dual encoder–decoder framework for anatomical structure segmentation in chest X-ray images
title_short A deep learning based dual encoder–decoder framework for anatomical structure segmentation in chest X-ray images
title_sort deep learning based dual encoder–decoder framework for anatomical structure segmentation in chest x-ray images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9842654/
https://www.ncbi.nlm.nih.gov/pubmed/36646735
http://dx.doi.org/10.1038/s41598-023-27815-w
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