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A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy
BACKGROUND: CD161 has been linked to the appearance and development of various cancers. METHODS: The mutation map and the variation of CNVs and SNVs of CD161 were displayed according to cBioportal and GSCALite. We also evaluated the pathway enrichment and drug sensitivity of CD161 according to GSCAL...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9844218/ https://www.ncbi.nlm.nih.gov/pubmed/36660546 http://dx.doi.org/10.3389/fimmu.2022.1040289 |
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author | Li, He Zhou, Ke Wang, Kaiyue Cao, Hui Wu, Wantao Wang, Zeyu Dai, Ziyu Chen, Shi Peng, Yun Xiao, Gelei Luo, Peng Zhang, Jian Liu, Zaoqu Cheng, Quan Zhang, Hao |
author_facet | Li, He Zhou, Ke Wang, Kaiyue Cao, Hui Wu, Wantao Wang, Zeyu Dai, Ziyu Chen, Shi Peng, Yun Xiao, Gelei Luo, Peng Zhang, Jian Liu, Zaoqu Cheng, Quan Zhang, Hao |
author_sort | Li, He |
collection | PubMed |
description | BACKGROUND: CD161 has been linked to the appearance and development of various cancers. METHODS: The mutation map and the variation of CNVs and SNVs of CD161 were displayed according to cBioportal and GSCALite. We also evaluated the pathway enrichment and drug sensitivity of CD161 according to GSCALite. We performed a single-cell sequencing analysis of cancer cells and T cells in melanoma. The cell communication patterns related to CD161 were further explored. Multiplex immunofluorescence staining of tissue microarrays was used to detect the association between CD161 expression and macrophages and T cells. RESULTS: A high CD161 level was related to neoantigens expression, pathway enrichment, and drug sensitivity. In addition, single-cell sequencing analysis showed that CD161 was mainly expressed in T cells, M1 and M2 Macrophages, neoplastic, microglial cells, neurons, and cancer cells in many tumor types. Further study on pseudotime trajectories and functional annotation of CD161 proved the critical role of CD161 in tumor progression and T cell immunity in melanoma. Multiplex immunofluorescence revealed that CD161 is closely correlated with the immune infiltration of T cells and macrophages in multiple cancers. In addition, high CD161 expression predicted a favorable immunotherapy response. CONCLUSION: CD161 is involved in the immune infiltration of T cells and macrophages and might be a promising target for tumor immunotherapy. |
format | Online Article Text |
id | pubmed-9844218 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98442182023-01-18 A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy Li, He Zhou, Ke Wang, Kaiyue Cao, Hui Wu, Wantao Wang, Zeyu Dai, Ziyu Chen, Shi Peng, Yun Xiao, Gelei Luo, Peng Zhang, Jian Liu, Zaoqu Cheng, Quan Zhang, Hao Front Immunol Immunology BACKGROUND: CD161 has been linked to the appearance and development of various cancers. METHODS: The mutation map and the variation of CNVs and SNVs of CD161 were displayed according to cBioportal and GSCALite. We also evaluated the pathway enrichment and drug sensitivity of CD161 according to GSCALite. We performed a single-cell sequencing analysis of cancer cells and T cells in melanoma. The cell communication patterns related to CD161 were further explored. Multiplex immunofluorescence staining of tissue microarrays was used to detect the association between CD161 expression and macrophages and T cells. RESULTS: A high CD161 level was related to neoantigens expression, pathway enrichment, and drug sensitivity. In addition, single-cell sequencing analysis showed that CD161 was mainly expressed in T cells, M1 and M2 Macrophages, neoplastic, microglial cells, neurons, and cancer cells in many tumor types. Further study on pseudotime trajectories and functional annotation of CD161 proved the critical role of CD161 in tumor progression and T cell immunity in melanoma. Multiplex immunofluorescence revealed that CD161 is closely correlated with the immune infiltration of T cells and macrophages in multiple cancers. In addition, high CD161 expression predicted a favorable immunotherapy response. CONCLUSION: CD161 is involved in the immune infiltration of T cells and macrophages and might be a promising target for tumor immunotherapy. Frontiers Media S.A. 2022-12-22 /pmc/articles/PMC9844218/ /pubmed/36660546 http://dx.doi.org/10.3389/fimmu.2022.1040289 Text en Copyright © 2022 Li, Zhou, Wang, Cao, Wu, Wang, Dai, Chen, Peng, Xiao, Luo, Zhang, Liu, Cheng and Zhang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Li, He Zhou, Ke Wang, Kaiyue Cao, Hui Wu, Wantao Wang, Zeyu Dai, Ziyu Chen, Shi Peng, Yun Xiao, Gelei Luo, Peng Zhang, Jian Liu, Zaoqu Cheng, Quan Zhang, Hao A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy |
title | A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy |
title_full | A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy |
title_fullStr | A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy |
title_full_unstemmed | A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy |
title_short | A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy |
title_sort | pan-cancer and single-cell sequencing analysis of cd161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9844218/ https://www.ncbi.nlm.nih.gov/pubmed/36660546 http://dx.doi.org/10.3389/fimmu.2022.1040289 |
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