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A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy

BACKGROUND: CD161 has been linked to the appearance and development of various cancers. METHODS: The mutation map and the variation of CNVs and SNVs of CD161 were displayed according to cBioportal and GSCALite. We also evaluated the pathway enrichment and drug sensitivity of CD161 according to GSCAL...

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Autores principales: Li, He, Zhou, Ke, Wang, Kaiyue, Cao, Hui, Wu, Wantao, Wang, Zeyu, Dai, Ziyu, Chen, Shi, Peng, Yun, Xiao, Gelei, Luo, Peng, Zhang, Jian, Liu, Zaoqu, Cheng, Quan, Zhang, Hao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9844218/
https://www.ncbi.nlm.nih.gov/pubmed/36660546
http://dx.doi.org/10.3389/fimmu.2022.1040289
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author Li, He
Zhou, Ke
Wang, Kaiyue
Cao, Hui
Wu, Wantao
Wang, Zeyu
Dai, Ziyu
Chen, Shi
Peng, Yun
Xiao, Gelei
Luo, Peng
Zhang, Jian
Liu, Zaoqu
Cheng, Quan
Zhang, Hao
author_facet Li, He
Zhou, Ke
Wang, Kaiyue
Cao, Hui
Wu, Wantao
Wang, Zeyu
Dai, Ziyu
Chen, Shi
Peng, Yun
Xiao, Gelei
Luo, Peng
Zhang, Jian
Liu, Zaoqu
Cheng, Quan
Zhang, Hao
author_sort Li, He
collection PubMed
description BACKGROUND: CD161 has been linked to the appearance and development of various cancers. METHODS: The mutation map and the variation of CNVs and SNVs of CD161 were displayed according to cBioportal and GSCALite. We also evaluated the pathway enrichment and drug sensitivity of CD161 according to GSCALite. We performed a single-cell sequencing analysis of cancer cells and T cells in melanoma. The cell communication patterns related to CD161 were further explored. Multiplex immunofluorescence staining of tissue microarrays was used to detect the association between CD161 expression and macrophages and T cells. RESULTS: A high CD161 level was related to neoantigens expression, pathway enrichment, and drug sensitivity. In addition, single-cell sequencing analysis showed that CD161 was mainly expressed in T cells, M1 and M2 Macrophages, neoplastic, microglial cells, neurons, and cancer cells in many tumor types. Further study on pseudotime trajectories and functional annotation of CD161 proved the critical role of CD161 in tumor progression and T cell immunity in melanoma. Multiplex immunofluorescence revealed that CD161 is closely correlated with the immune infiltration of T cells and macrophages in multiple cancers. In addition, high CD161 expression predicted a favorable immunotherapy response. CONCLUSION: CD161 is involved in the immune infiltration of T cells and macrophages and might be a promising target for tumor immunotherapy.
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spelling pubmed-98442182023-01-18 A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy Li, He Zhou, Ke Wang, Kaiyue Cao, Hui Wu, Wantao Wang, Zeyu Dai, Ziyu Chen, Shi Peng, Yun Xiao, Gelei Luo, Peng Zhang, Jian Liu, Zaoqu Cheng, Quan Zhang, Hao Front Immunol Immunology BACKGROUND: CD161 has been linked to the appearance and development of various cancers. METHODS: The mutation map and the variation of CNVs and SNVs of CD161 were displayed according to cBioportal and GSCALite. We also evaluated the pathway enrichment and drug sensitivity of CD161 according to GSCALite. We performed a single-cell sequencing analysis of cancer cells and T cells in melanoma. The cell communication patterns related to CD161 were further explored. Multiplex immunofluorescence staining of tissue microarrays was used to detect the association between CD161 expression and macrophages and T cells. RESULTS: A high CD161 level was related to neoantigens expression, pathway enrichment, and drug sensitivity. In addition, single-cell sequencing analysis showed that CD161 was mainly expressed in T cells, M1 and M2 Macrophages, neoplastic, microglial cells, neurons, and cancer cells in many tumor types. Further study on pseudotime trajectories and functional annotation of CD161 proved the critical role of CD161 in tumor progression and T cell immunity in melanoma. Multiplex immunofluorescence revealed that CD161 is closely correlated with the immune infiltration of T cells and macrophages in multiple cancers. In addition, high CD161 expression predicted a favorable immunotherapy response. CONCLUSION: CD161 is involved in the immune infiltration of T cells and macrophages and might be a promising target for tumor immunotherapy. Frontiers Media S.A. 2022-12-22 /pmc/articles/PMC9844218/ /pubmed/36660546 http://dx.doi.org/10.3389/fimmu.2022.1040289 Text en Copyright © 2022 Li, Zhou, Wang, Cao, Wu, Wang, Dai, Chen, Peng, Xiao, Luo, Zhang, Liu, Cheng and Zhang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Li, He
Zhou, Ke
Wang, Kaiyue
Cao, Hui
Wu, Wantao
Wang, Zeyu
Dai, Ziyu
Chen, Shi
Peng, Yun
Xiao, Gelei
Luo, Peng
Zhang, Jian
Liu, Zaoqu
Cheng, Quan
Zhang, Hao
A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy
title A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy
title_full A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy
title_fullStr A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy
title_full_unstemmed A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy
title_short A pan-cancer and single-cell sequencing analysis of CD161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy
title_sort pan-cancer and single-cell sequencing analysis of cd161, a promising onco-immunological biomarker in tumor microenvironment and immunotherapy
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9844218/
https://www.ncbi.nlm.nih.gov/pubmed/36660546
http://dx.doi.org/10.3389/fimmu.2022.1040289
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