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Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop
Grass pea (Lathyrus sativus) is a cool-season legume crop tolerant to drought, salinity, waterlogging, insects, and other biotic stresses. Despite these beneficial traits, this crop is not cultivated widely due to the accumulation of a neurotoxin - β-N-oxalyl-L-α, β-diaminopropionic acid (β-ODAP) in...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9845207/ https://www.ncbi.nlm.nih.gov/pubmed/36650149 http://dx.doi.org/10.1038/s41597-022-01903-4 |
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author | Rajarammohan, Sivasubramanian Kaur, Lovenpreet Verma, Anjali Singh, Dalwinder Mantri, Shrikant Roy, Joy K Sharma, Tilak Raj Pareek, Ashwani Kandoth, Pramod Kaitheri |
author_facet | Rajarammohan, Sivasubramanian Kaur, Lovenpreet Verma, Anjali Singh, Dalwinder Mantri, Shrikant Roy, Joy K Sharma, Tilak Raj Pareek, Ashwani Kandoth, Pramod Kaitheri |
author_sort | Rajarammohan, Sivasubramanian |
collection | PubMed |
description | Grass pea (Lathyrus sativus) is a cool-season legume crop tolerant to drought, salinity, waterlogging, insects, and other biotic stresses. Despite these beneficial traits, this crop is not cultivated widely due to the accumulation of a neurotoxin - β-N-oxalyl-L-α, β-diaminopropionic acid (β-ODAP) in the seeds and its association with neurolathyrism. In this study, we sequenced and assembled the genome of Lathyrus sativus cultivar Pusa-24, an elite Indian cultivar extensively used in breeding programs. The assembled genome of Lathyrus was 3.80 Gb in length, with a scaffold N50 of 421.39 Mb. BUSCO assessment indicated that 98.3% of highly conserved Viridiplantae genes were present in the assembly. A total of 3.17 Gb (83.31%) of repetitive sequences and 50,106 protein-coding genes were identified in the Lathyrus assembly. The Lathyrus genome assembly reported here thus provides a much-needed and robust foundation for various genetic and genomic studies in this vital legume crop. |
format | Online Article Text |
id | pubmed-9845207 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-98452072023-01-19 Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop Rajarammohan, Sivasubramanian Kaur, Lovenpreet Verma, Anjali Singh, Dalwinder Mantri, Shrikant Roy, Joy K Sharma, Tilak Raj Pareek, Ashwani Kandoth, Pramod Kaitheri Sci Data Data Descriptor Grass pea (Lathyrus sativus) is a cool-season legume crop tolerant to drought, salinity, waterlogging, insects, and other biotic stresses. Despite these beneficial traits, this crop is not cultivated widely due to the accumulation of a neurotoxin - β-N-oxalyl-L-α, β-diaminopropionic acid (β-ODAP) in the seeds and its association with neurolathyrism. In this study, we sequenced and assembled the genome of Lathyrus sativus cultivar Pusa-24, an elite Indian cultivar extensively used in breeding programs. The assembled genome of Lathyrus was 3.80 Gb in length, with a scaffold N50 of 421.39 Mb. BUSCO assessment indicated that 98.3% of highly conserved Viridiplantae genes were present in the assembly. A total of 3.17 Gb (83.31%) of repetitive sequences and 50,106 protein-coding genes were identified in the Lathyrus assembly. The Lathyrus genome assembly reported here thus provides a much-needed and robust foundation for various genetic and genomic studies in this vital legume crop. Nature Publishing Group UK 2023-01-17 /pmc/articles/PMC9845207/ /pubmed/36650149 http://dx.doi.org/10.1038/s41597-022-01903-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Rajarammohan, Sivasubramanian Kaur, Lovenpreet Verma, Anjali Singh, Dalwinder Mantri, Shrikant Roy, Joy K Sharma, Tilak Raj Pareek, Ashwani Kandoth, Pramod Kaitheri Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop |
title | Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop |
title_full | Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop |
title_fullStr | Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop |
title_full_unstemmed | Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop |
title_short | Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop |
title_sort | genome sequencing and assembly of lathyrus sativus - a nutrient-rich hardy legume crop |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9845207/ https://www.ncbi.nlm.nih.gov/pubmed/36650149 http://dx.doi.org/10.1038/s41597-022-01903-4 |
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