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Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop

Grass pea (Lathyrus sativus) is a cool-season legume crop tolerant to drought, salinity, waterlogging, insects, and other biotic stresses. Despite these beneficial traits, this crop is not cultivated widely due to the accumulation of a neurotoxin - β-N-oxalyl-L-α, β-diaminopropionic acid (β-ODAP) in...

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Autores principales: Rajarammohan, Sivasubramanian, Kaur, Lovenpreet, Verma, Anjali, Singh, Dalwinder, Mantri, Shrikant, Roy, Joy K, Sharma, Tilak Raj, Pareek, Ashwani, Kandoth, Pramod Kaitheri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9845207/
https://www.ncbi.nlm.nih.gov/pubmed/36650149
http://dx.doi.org/10.1038/s41597-022-01903-4
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author Rajarammohan, Sivasubramanian
Kaur, Lovenpreet
Verma, Anjali
Singh, Dalwinder
Mantri, Shrikant
Roy, Joy K
Sharma, Tilak Raj
Pareek, Ashwani
Kandoth, Pramod Kaitheri
author_facet Rajarammohan, Sivasubramanian
Kaur, Lovenpreet
Verma, Anjali
Singh, Dalwinder
Mantri, Shrikant
Roy, Joy K
Sharma, Tilak Raj
Pareek, Ashwani
Kandoth, Pramod Kaitheri
author_sort Rajarammohan, Sivasubramanian
collection PubMed
description Grass pea (Lathyrus sativus) is a cool-season legume crop tolerant to drought, salinity, waterlogging, insects, and other biotic stresses. Despite these beneficial traits, this crop is not cultivated widely due to the accumulation of a neurotoxin - β-N-oxalyl-L-α, β-diaminopropionic acid (β-ODAP) in the seeds and its association with neurolathyrism. In this study, we sequenced and assembled the genome of Lathyrus sativus cultivar Pusa-24, an elite Indian cultivar extensively used in breeding programs. The assembled genome of Lathyrus was 3.80 Gb in length, with a scaffold N50 of 421.39 Mb. BUSCO assessment indicated that 98.3% of highly conserved Viridiplantae genes were present in the assembly. A total of 3.17 Gb (83.31%) of repetitive sequences and 50,106 protein-coding genes were identified in the Lathyrus assembly. The Lathyrus genome assembly reported here thus provides a much-needed and robust foundation for various genetic and genomic studies in this vital legume crop.
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spelling pubmed-98452072023-01-19 Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop Rajarammohan, Sivasubramanian Kaur, Lovenpreet Verma, Anjali Singh, Dalwinder Mantri, Shrikant Roy, Joy K Sharma, Tilak Raj Pareek, Ashwani Kandoth, Pramod Kaitheri Sci Data Data Descriptor Grass pea (Lathyrus sativus) is a cool-season legume crop tolerant to drought, salinity, waterlogging, insects, and other biotic stresses. Despite these beneficial traits, this crop is not cultivated widely due to the accumulation of a neurotoxin - β-N-oxalyl-L-α, β-diaminopropionic acid (β-ODAP) in the seeds and its association with neurolathyrism. In this study, we sequenced and assembled the genome of Lathyrus sativus cultivar Pusa-24, an elite Indian cultivar extensively used in breeding programs. The assembled genome of Lathyrus was 3.80 Gb in length, with a scaffold N50 of 421.39 Mb. BUSCO assessment indicated that 98.3% of highly conserved Viridiplantae genes were present in the assembly. A total of 3.17 Gb (83.31%) of repetitive sequences and 50,106 protein-coding genes were identified in the Lathyrus assembly. The Lathyrus genome assembly reported here thus provides a much-needed and robust foundation for various genetic and genomic studies in this vital legume crop. Nature Publishing Group UK 2023-01-17 /pmc/articles/PMC9845207/ /pubmed/36650149 http://dx.doi.org/10.1038/s41597-022-01903-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Rajarammohan, Sivasubramanian
Kaur, Lovenpreet
Verma, Anjali
Singh, Dalwinder
Mantri, Shrikant
Roy, Joy K
Sharma, Tilak Raj
Pareek, Ashwani
Kandoth, Pramod Kaitheri
Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop
title Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop
title_full Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop
title_fullStr Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop
title_full_unstemmed Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop
title_short Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop
title_sort genome sequencing and assembly of lathyrus sativus - a nutrient-rich hardy legume crop
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9845207/
https://www.ncbi.nlm.nih.gov/pubmed/36650149
http://dx.doi.org/10.1038/s41597-022-01903-4
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