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Construction of an original anoikis-related prognostic model closely related to immune infiltration in gastric cancer

Background: Anoikis is considered as a particular type of programmed cell death, the weakness or resistance of which contributes greatly to the development and progression of most malignant solid tumors. However, the latent impact of anoikis-related genes (ARGs) on gastric cancer (GC) is still ambig...

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Autores principales: Zhao, Zhihong, Li, Cun, Peng, Ye, Liu, Rui, Li, Qian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9845267/
https://www.ncbi.nlm.nih.gov/pubmed/36685842
http://dx.doi.org/10.3389/fgene.2022.1087201
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author Zhao, Zhihong
Li, Cun
Peng, Ye
Liu, Rui
Li, Qian
author_facet Zhao, Zhihong
Li, Cun
Peng, Ye
Liu, Rui
Li, Qian
author_sort Zhao, Zhihong
collection PubMed
description Background: Anoikis is considered as a particular type of programmed cell death, the weakness or resistance of which contributes greatly to the development and progression of most malignant solid tumors. However, the latent impact of anoikis-related genes (ARGs) on gastric cancer (GC) is still ambiguous. Based on these, this study established an anoikis-related prognostic model of GC to identify the prognosis of patients and provide more effective treatment in clinical practice. Methods: First, we extracted four public datasets containing the gene expression and clinicopathological information of GC, which were worked as the training and validating sets, separately. Then, an anoikis-related survival-predicted model of GC was developed via Lasso and COX regression analyses and verified by using the Kaplan-Meier (KM) curve and receiver operating characteristic (ROC) curve analyses. Next, we assigned GC patients to two groups characterized by the risk score calculated and analyzed somatic mutation, functional pathways, and immune infiltration between the different two groups. Finally, a unique nomogram was offered to clinicians to forecast the personal survival probability of GC patients. Results: Based on seven anoikis-related markers screened and identified, a carcinogenic model of risk score was produced. Patients placed in the high-score group suffered significantly worse overall survival (OS) in four cohorts. Additionally, the model revealed a high sensitivity and specificity to prognosticate the prognoses of GC patients [area under the ROC curve (AUC) at 5-year = 0.713; GSE84437, AUC at 5-year = 0.639; GSE15459, AUC at 5-year = 0.672; GSE62254, AUC at 5-year = 0.616]. Apart from the excellent predictive performance, the model was also identified as an independent prediction factor from other clinicopathological characteristics. Combining anoikis-related prognostic model with GC clinical features, we built a more comprehensive nomogram to foresee the likelihood of survival of GC patients in a given year, showing a well-accurate prediction performance. Conclusion: In summary, this study created a new anoikis-related signature for GC, which has potentially provided new critical insights into survival prediction and individualized therapy development.
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spelling pubmed-98452672023-01-19 Construction of an original anoikis-related prognostic model closely related to immune infiltration in gastric cancer Zhao, Zhihong Li, Cun Peng, Ye Liu, Rui Li, Qian Front Genet Genetics Background: Anoikis is considered as a particular type of programmed cell death, the weakness or resistance of which contributes greatly to the development and progression of most malignant solid tumors. However, the latent impact of anoikis-related genes (ARGs) on gastric cancer (GC) is still ambiguous. Based on these, this study established an anoikis-related prognostic model of GC to identify the prognosis of patients and provide more effective treatment in clinical practice. Methods: First, we extracted four public datasets containing the gene expression and clinicopathological information of GC, which were worked as the training and validating sets, separately. Then, an anoikis-related survival-predicted model of GC was developed via Lasso and COX regression analyses and verified by using the Kaplan-Meier (KM) curve and receiver operating characteristic (ROC) curve analyses. Next, we assigned GC patients to two groups characterized by the risk score calculated and analyzed somatic mutation, functional pathways, and immune infiltration between the different two groups. Finally, a unique nomogram was offered to clinicians to forecast the personal survival probability of GC patients. Results: Based on seven anoikis-related markers screened and identified, a carcinogenic model of risk score was produced. Patients placed in the high-score group suffered significantly worse overall survival (OS) in four cohorts. Additionally, the model revealed a high sensitivity and specificity to prognosticate the prognoses of GC patients [area under the ROC curve (AUC) at 5-year = 0.713; GSE84437, AUC at 5-year = 0.639; GSE15459, AUC at 5-year = 0.672; GSE62254, AUC at 5-year = 0.616]. Apart from the excellent predictive performance, the model was also identified as an independent prediction factor from other clinicopathological characteristics. Combining anoikis-related prognostic model with GC clinical features, we built a more comprehensive nomogram to foresee the likelihood of survival of GC patients in a given year, showing a well-accurate prediction performance. Conclusion: In summary, this study created a new anoikis-related signature for GC, which has potentially provided new critical insights into survival prediction and individualized therapy development. Frontiers Media S.A. 2023-01-04 /pmc/articles/PMC9845267/ /pubmed/36685842 http://dx.doi.org/10.3389/fgene.2022.1087201 Text en Copyright © 2023 Zhao, Li, Peng, Liu and Li. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Zhao, Zhihong
Li, Cun
Peng, Ye
Liu, Rui
Li, Qian
Construction of an original anoikis-related prognostic model closely related to immune infiltration in gastric cancer
title Construction of an original anoikis-related prognostic model closely related to immune infiltration in gastric cancer
title_full Construction of an original anoikis-related prognostic model closely related to immune infiltration in gastric cancer
title_fullStr Construction of an original anoikis-related prognostic model closely related to immune infiltration in gastric cancer
title_full_unstemmed Construction of an original anoikis-related prognostic model closely related to immune infiltration in gastric cancer
title_short Construction of an original anoikis-related prognostic model closely related to immune infiltration in gastric cancer
title_sort construction of an original anoikis-related prognostic model closely related to immune infiltration in gastric cancer
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9845267/
https://www.ncbi.nlm.nih.gov/pubmed/36685842
http://dx.doi.org/10.3389/fgene.2022.1087201
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