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Experimental–theoretical study of laccase as a detoxifier of aflatoxins

We investigate laccase-mediated detoxification of aflatoxins, fungal carcinogenic food contaminants. Our experimental comparison between two aflatoxins with similar structures (AFB(1) and AFG(2)) shows significant differences in laccase-mediated detoxification. A multi-scale modeling approach (Docki...

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Autores principales: Zaccaria, Marco, Dawson, William, Russel Kish, Darius, Reverberi, Massimo, Bonaccorsi di Patti, Maria Carmela, Domin, Marek, Cristiglio, Viviana, Chan, Bun, Dellafiora, Luca, Gabel, Frank, Nakajima, Takahito, Genovese, Luigi, Momeni, Babak
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9845376/
https://www.ncbi.nlm.nih.gov/pubmed/36650163
http://dx.doi.org/10.1038/s41598-023-27519-1
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author Zaccaria, Marco
Dawson, William
Russel Kish, Darius
Reverberi, Massimo
Bonaccorsi di Patti, Maria Carmela
Domin, Marek
Cristiglio, Viviana
Chan, Bun
Dellafiora, Luca
Gabel, Frank
Nakajima, Takahito
Genovese, Luigi
Momeni, Babak
author_facet Zaccaria, Marco
Dawson, William
Russel Kish, Darius
Reverberi, Massimo
Bonaccorsi di Patti, Maria Carmela
Domin, Marek
Cristiglio, Viviana
Chan, Bun
Dellafiora, Luca
Gabel, Frank
Nakajima, Takahito
Genovese, Luigi
Momeni, Babak
author_sort Zaccaria, Marco
collection PubMed
description We investigate laccase-mediated detoxification of aflatoxins, fungal carcinogenic food contaminants. Our experimental comparison between two aflatoxins with similar structures (AFB(1) and AFG(2)) shows significant differences in laccase-mediated detoxification. A multi-scale modeling approach (Docking, Molecular Dynamics, and Density Functional Theory) identifies the highly substrate-specific changes required to improve laccase detoxifying performance. We employ a large-scale density functional theory-based approach, involving more than 7000 atoms, to identify the amino acid residues that determine the affinity of laccase for aflatoxins. From this study we conclude: (1) AFB(1) is more challenging to degrade, to the point of complete degradation stalling; (2) AFG(2) is easier to degrade by laccase due to its lack of side products and favorable binding dynamics; and (3) ample opportunities to optimize laccase for aflatoxin degradation exist, especially via mutations leading to π–π stacking. This study identifies a way to optimize laccase for aflatoxin bioremediation and, more generally, contributes to the research efforts aimed at rational enzyme optimization.
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spelling pubmed-98453762023-01-19 Experimental–theoretical study of laccase as a detoxifier of aflatoxins Zaccaria, Marco Dawson, William Russel Kish, Darius Reverberi, Massimo Bonaccorsi di Patti, Maria Carmela Domin, Marek Cristiglio, Viviana Chan, Bun Dellafiora, Luca Gabel, Frank Nakajima, Takahito Genovese, Luigi Momeni, Babak Sci Rep Article We investigate laccase-mediated detoxification of aflatoxins, fungal carcinogenic food contaminants. Our experimental comparison between two aflatoxins with similar structures (AFB(1) and AFG(2)) shows significant differences in laccase-mediated detoxification. A multi-scale modeling approach (Docking, Molecular Dynamics, and Density Functional Theory) identifies the highly substrate-specific changes required to improve laccase detoxifying performance. We employ a large-scale density functional theory-based approach, involving more than 7000 atoms, to identify the amino acid residues that determine the affinity of laccase for aflatoxins. From this study we conclude: (1) AFB(1) is more challenging to degrade, to the point of complete degradation stalling; (2) AFG(2) is easier to degrade by laccase due to its lack of side products and favorable binding dynamics; and (3) ample opportunities to optimize laccase for aflatoxin degradation exist, especially via mutations leading to π–π stacking. This study identifies a way to optimize laccase for aflatoxin bioremediation and, more generally, contributes to the research efforts aimed at rational enzyme optimization. Nature Publishing Group UK 2023-01-17 /pmc/articles/PMC9845376/ /pubmed/36650163 http://dx.doi.org/10.1038/s41598-023-27519-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Zaccaria, Marco
Dawson, William
Russel Kish, Darius
Reverberi, Massimo
Bonaccorsi di Patti, Maria Carmela
Domin, Marek
Cristiglio, Viviana
Chan, Bun
Dellafiora, Luca
Gabel, Frank
Nakajima, Takahito
Genovese, Luigi
Momeni, Babak
Experimental–theoretical study of laccase as a detoxifier of aflatoxins
title Experimental–theoretical study of laccase as a detoxifier of aflatoxins
title_full Experimental–theoretical study of laccase as a detoxifier of aflatoxins
title_fullStr Experimental–theoretical study of laccase as a detoxifier of aflatoxins
title_full_unstemmed Experimental–theoretical study of laccase as a detoxifier of aflatoxins
title_short Experimental–theoretical study of laccase as a detoxifier of aflatoxins
title_sort experimental–theoretical study of laccase as a detoxifier of aflatoxins
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9845376/
https://www.ncbi.nlm.nih.gov/pubmed/36650163
http://dx.doi.org/10.1038/s41598-023-27519-1
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