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Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma

Background: Hepatocellular carcinoma is a highly malignant tumor with significant heterogeneity. Metabolic reprogramming plays an essential role in the progression of hepatocellular carcinoma. Among them, nucleotide metabolism needs further investigation. Methods: Based on the bioinformatics approac...

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Autores principales: Li, Yu, Wu, Chunyan, Ge, Yingnan, Chen, Xi, Zhu, Li, Chu, Ling, Wang, Jia, Yan, Meiling, Deng, Hao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846068/
https://www.ncbi.nlm.nih.gov/pubmed/36685912
http://dx.doi.org/10.3389/fgene.2022.1089291
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author Li, Yu
Wu, Chunyan
Ge, Yingnan
Chen, Xi
Zhu, Li
Chu, Ling
Wang, Jia
Yan, Meiling
Deng, Hao
author_facet Li, Yu
Wu, Chunyan
Ge, Yingnan
Chen, Xi
Zhu, Li
Chu, Ling
Wang, Jia
Yan, Meiling
Deng, Hao
author_sort Li, Yu
collection PubMed
description Background: Hepatocellular carcinoma is a highly malignant tumor with significant heterogeneity. Metabolic reprogramming plays an essential role in the progression of hepatocellular carcinoma. Among them, nucleotide metabolism needs further investigation. Methods: Based on the bioinformatics approach, eleven prognosis-related nucleotide metabolism genes of hepatocellular carcinoma were screened in this study. Based on the Lasso-Cox regression method, we finally identified a prognostic model containing six genes and calculated the risk score for each patient. In addition, a nomogram was constructed on the basis of pathological stage and risk score. Results: Patients with high-risk score had worse prognosis than those with low-risk. The predictive efficiency of the model was efficient in both the TCGA dataset and the ICGC dataset. The risk score is an independent prognostic factor that can be used to screen chemotherapy drugs. In addition, the risk score can be useful in guiding patient care at an early stage. Conclusion: Nucleotide metabolism-related prognostic model can more accurately predict the prognosis of patients with hepatocellular carcinoma. As a novel prediction model, it is expected to help clinical staff to provide targeted treatment and nursing to patients.
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spelling pubmed-98460682023-01-19 Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma Li, Yu Wu, Chunyan Ge, Yingnan Chen, Xi Zhu, Li Chu, Ling Wang, Jia Yan, Meiling Deng, Hao Front Genet Genetics Background: Hepatocellular carcinoma is a highly malignant tumor with significant heterogeneity. Metabolic reprogramming plays an essential role in the progression of hepatocellular carcinoma. Among them, nucleotide metabolism needs further investigation. Methods: Based on the bioinformatics approach, eleven prognosis-related nucleotide metabolism genes of hepatocellular carcinoma were screened in this study. Based on the Lasso-Cox regression method, we finally identified a prognostic model containing six genes and calculated the risk score for each patient. In addition, a nomogram was constructed on the basis of pathological stage and risk score. Results: Patients with high-risk score had worse prognosis than those with low-risk. The predictive efficiency of the model was efficient in both the TCGA dataset and the ICGC dataset. The risk score is an independent prognostic factor that can be used to screen chemotherapy drugs. In addition, the risk score can be useful in guiding patient care at an early stage. Conclusion: Nucleotide metabolism-related prognostic model can more accurately predict the prognosis of patients with hepatocellular carcinoma. As a novel prediction model, it is expected to help clinical staff to provide targeted treatment and nursing to patients. Frontiers Media S.A. 2023-01-04 /pmc/articles/PMC9846068/ /pubmed/36685912 http://dx.doi.org/10.3389/fgene.2022.1089291 Text en Copyright © 2023 Li, Wu, Ge, Chen, Zhu, Chu, Wang, Yan and Deng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Li, Yu
Wu, Chunyan
Ge, Yingnan
Chen, Xi
Zhu, Li
Chu, Ling
Wang, Jia
Yan, Meiling
Deng, Hao
Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma
title Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma
title_full Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma
title_fullStr Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma
title_full_unstemmed Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma
title_short Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma
title_sort identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846068/
https://www.ncbi.nlm.nih.gov/pubmed/36685912
http://dx.doi.org/10.3389/fgene.2022.1089291
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