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Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma
Background: Hepatocellular carcinoma is a highly malignant tumor with significant heterogeneity. Metabolic reprogramming plays an essential role in the progression of hepatocellular carcinoma. Among them, nucleotide metabolism needs further investigation. Methods: Based on the bioinformatics approac...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846068/ https://www.ncbi.nlm.nih.gov/pubmed/36685912 http://dx.doi.org/10.3389/fgene.2022.1089291 |
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author | Li, Yu Wu, Chunyan Ge, Yingnan Chen, Xi Zhu, Li Chu, Ling Wang, Jia Yan, Meiling Deng, Hao |
author_facet | Li, Yu Wu, Chunyan Ge, Yingnan Chen, Xi Zhu, Li Chu, Ling Wang, Jia Yan, Meiling Deng, Hao |
author_sort | Li, Yu |
collection | PubMed |
description | Background: Hepatocellular carcinoma is a highly malignant tumor with significant heterogeneity. Metabolic reprogramming plays an essential role in the progression of hepatocellular carcinoma. Among them, nucleotide metabolism needs further investigation. Methods: Based on the bioinformatics approach, eleven prognosis-related nucleotide metabolism genes of hepatocellular carcinoma were screened in this study. Based on the Lasso-Cox regression method, we finally identified a prognostic model containing six genes and calculated the risk score for each patient. In addition, a nomogram was constructed on the basis of pathological stage and risk score. Results: Patients with high-risk score had worse prognosis than those with low-risk. The predictive efficiency of the model was efficient in both the TCGA dataset and the ICGC dataset. The risk score is an independent prognostic factor that can be used to screen chemotherapy drugs. In addition, the risk score can be useful in guiding patient care at an early stage. Conclusion: Nucleotide metabolism-related prognostic model can more accurately predict the prognosis of patients with hepatocellular carcinoma. As a novel prediction model, it is expected to help clinical staff to provide targeted treatment and nursing to patients. |
format | Online Article Text |
id | pubmed-9846068 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98460682023-01-19 Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma Li, Yu Wu, Chunyan Ge, Yingnan Chen, Xi Zhu, Li Chu, Ling Wang, Jia Yan, Meiling Deng, Hao Front Genet Genetics Background: Hepatocellular carcinoma is a highly malignant tumor with significant heterogeneity. Metabolic reprogramming plays an essential role in the progression of hepatocellular carcinoma. Among them, nucleotide metabolism needs further investigation. Methods: Based on the bioinformatics approach, eleven prognosis-related nucleotide metabolism genes of hepatocellular carcinoma were screened in this study. Based on the Lasso-Cox regression method, we finally identified a prognostic model containing six genes and calculated the risk score for each patient. In addition, a nomogram was constructed on the basis of pathological stage and risk score. Results: Patients with high-risk score had worse prognosis than those with low-risk. The predictive efficiency of the model was efficient in both the TCGA dataset and the ICGC dataset. The risk score is an independent prognostic factor that can be used to screen chemotherapy drugs. In addition, the risk score can be useful in guiding patient care at an early stage. Conclusion: Nucleotide metabolism-related prognostic model can more accurately predict the prognosis of patients with hepatocellular carcinoma. As a novel prediction model, it is expected to help clinical staff to provide targeted treatment and nursing to patients. Frontiers Media S.A. 2023-01-04 /pmc/articles/PMC9846068/ /pubmed/36685912 http://dx.doi.org/10.3389/fgene.2022.1089291 Text en Copyright © 2023 Li, Wu, Ge, Chen, Zhu, Chu, Wang, Yan and Deng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Li, Yu Wu, Chunyan Ge, Yingnan Chen, Xi Zhu, Li Chu, Ling Wang, Jia Yan, Meiling Deng, Hao Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma |
title | Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma |
title_full | Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma |
title_fullStr | Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma |
title_full_unstemmed | Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma |
title_short | Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma |
title_sort | identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846068/ https://www.ncbi.nlm.nih.gov/pubmed/36685912 http://dx.doi.org/10.3389/fgene.2022.1089291 |
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