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Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia

Introduction: Preeclampsia (PE) is a gestational hypertensive disease with unclear pathogenesis. This study aimed to identify the genes that play an important role in determining the pathogenesis of PE using bioinformatics analysis and fundamental researches. Materials and methods: Datasets from the...

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Autores principales: Wang, Yajuan, Bai, Xuening, Guo, Xin, Gao, Xiaoli, Chen, Yuanyuan, Li, Huanrong, Fan, Wenjun, Han, Cha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846503/
https://www.ncbi.nlm.nih.gov/pubmed/36685185
http://dx.doi.org/10.3389/fphys.2022.1031950
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author Wang, Yajuan
Bai, Xuening
Guo, Xin
Gao, Xiaoli
Chen, Yuanyuan
Li, Huanrong
Fan, Wenjun
Han, Cha
author_facet Wang, Yajuan
Bai, Xuening
Guo, Xin
Gao, Xiaoli
Chen, Yuanyuan
Li, Huanrong
Fan, Wenjun
Han, Cha
author_sort Wang, Yajuan
collection PubMed
description Introduction: Preeclampsia (PE) is a gestational hypertensive disease with unclear pathogenesis. This study aimed to identify the genes that play an important role in determining the pathogenesis of PE using bioinformatics analysis and fundamental researches. Materials and methods: Datasets from the Gene Expression Omnibus (GEO) database were used to screen for differentially expressed genes (DEGs). The NCBI, SangerBox, and other databases were used to analyze the functions of the DEGs. Targetscan7, miRWalk, ENCORI, DIANA TOOLS, CircBank databases, and the Cytoscape tool were used to construct the lncRNA/circRNA-miRNA- LEP network. SRAMP, RPISeq, RBPsuite, and catRPAID were used to analyze the RNA modifications of LEP. Immune cell infiltration was analyzed using the dataset GSE75010. Placental tissues from normal pregnant women and PE patients were collected, screened for gene expression using reverse transcription quantitative polymerase chain reaction (RT-qPCR) and western blotting. The results were further verified in HTR-8/SVneo cell line hypoxia model and PE mouse model. Results: Our analyses revealed that LEP was significantly upregulated in eight datasets. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) analyses indicated that LEP was involved in the JAK/STAT signaling pathway, angiogenesis, and placental development. Immune cell infiltration analysis showed that M1 and M2 macrophages differed between normal pregnancies and those in PE patients. A competing endogenous RNA (ceRNA) network was constructed, and proteins interacting with LEP were identified. RNA modification sites of LEP were also identified. Finally, the overexpression of LEP in PE was confirmed in clinical samples, HTR-8/SVneo cell line and PE mouse model. Conclusion: Our results indicate that LEP overexpression is associated with PE and may be a potential diagnostic marker and therapeutic target.
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spelling pubmed-98465032023-01-19 Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia Wang, Yajuan Bai, Xuening Guo, Xin Gao, Xiaoli Chen, Yuanyuan Li, Huanrong Fan, Wenjun Han, Cha Front Physiol Physiology Introduction: Preeclampsia (PE) is a gestational hypertensive disease with unclear pathogenesis. This study aimed to identify the genes that play an important role in determining the pathogenesis of PE using bioinformatics analysis and fundamental researches. Materials and methods: Datasets from the Gene Expression Omnibus (GEO) database were used to screen for differentially expressed genes (DEGs). The NCBI, SangerBox, and other databases were used to analyze the functions of the DEGs. Targetscan7, miRWalk, ENCORI, DIANA TOOLS, CircBank databases, and the Cytoscape tool were used to construct the lncRNA/circRNA-miRNA- LEP network. SRAMP, RPISeq, RBPsuite, and catRPAID were used to analyze the RNA modifications of LEP. Immune cell infiltration was analyzed using the dataset GSE75010. Placental tissues from normal pregnant women and PE patients were collected, screened for gene expression using reverse transcription quantitative polymerase chain reaction (RT-qPCR) and western blotting. The results were further verified in HTR-8/SVneo cell line hypoxia model and PE mouse model. Results: Our analyses revealed that LEP was significantly upregulated in eight datasets. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) analyses indicated that LEP was involved in the JAK/STAT signaling pathway, angiogenesis, and placental development. Immune cell infiltration analysis showed that M1 and M2 macrophages differed between normal pregnancies and those in PE patients. A competing endogenous RNA (ceRNA) network was constructed, and proteins interacting with LEP were identified. RNA modification sites of LEP were also identified. Finally, the overexpression of LEP in PE was confirmed in clinical samples, HTR-8/SVneo cell line and PE mouse model. Conclusion: Our results indicate that LEP overexpression is associated with PE and may be a potential diagnostic marker and therapeutic target. Frontiers Media S.A. 2023-01-04 /pmc/articles/PMC9846503/ /pubmed/36685185 http://dx.doi.org/10.3389/fphys.2022.1031950 Text en Copyright © 2023 Wang, Bai, Guo, Gao, Chen, Li, Fan and Han. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Physiology
Wang, Yajuan
Bai, Xuening
Guo, Xin
Gao, Xiaoli
Chen, Yuanyuan
Li, Huanrong
Fan, Wenjun
Han, Cha
Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia
title Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia
title_full Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia
title_fullStr Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia
title_full_unstemmed Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia
title_short Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia
title_sort bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia
topic Physiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846503/
https://www.ncbi.nlm.nih.gov/pubmed/36685185
http://dx.doi.org/10.3389/fphys.2022.1031950
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