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Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia
Introduction: Preeclampsia (PE) is a gestational hypertensive disease with unclear pathogenesis. This study aimed to identify the genes that play an important role in determining the pathogenesis of PE using bioinformatics analysis and fundamental researches. Materials and methods: Datasets from the...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846503/ https://www.ncbi.nlm.nih.gov/pubmed/36685185 http://dx.doi.org/10.3389/fphys.2022.1031950 |
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author | Wang, Yajuan Bai, Xuening Guo, Xin Gao, Xiaoli Chen, Yuanyuan Li, Huanrong Fan, Wenjun Han, Cha |
author_facet | Wang, Yajuan Bai, Xuening Guo, Xin Gao, Xiaoli Chen, Yuanyuan Li, Huanrong Fan, Wenjun Han, Cha |
author_sort | Wang, Yajuan |
collection | PubMed |
description | Introduction: Preeclampsia (PE) is a gestational hypertensive disease with unclear pathogenesis. This study aimed to identify the genes that play an important role in determining the pathogenesis of PE using bioinformatics analysis and fundamental researches. Materials and methods: Datasets from the Gene Expression Omnibus (GEO) database were used to screen for differentially expressed genes (DEGs). The NCBI, SangerBox, and other databases were used to analyze the functions of the DEGs. Targetscan7, miRWalk, ENCORI, DIANA TOOLS, CircBank databases, and the Cytoscape tool were used to construct the lncRNA/circRNA-miRNA- LEP network. SRAMP, RPISeq, RBPsuite, and catRPAID were used to analyze the RNA modifications of LEP. Immune cell infiltration was analyzed using the dataset GSE75010. Placental tissues from normal pregnant women and PE patients were collected, screened for gene expression using reverse transcription quantitative polymerase chain reaction (RT-qPCR) and western blotting. The results were further verified in HTR-8/SVneo cell line hypoxia model and PE mouse model. Results: Our analyses revealed that LEP was significantly upregulated in eight datasets. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) analyses indicated that LEP was involved in the JAK/STAT signaling pathway, angiogenesis, and placental development. Immune cell infiltration analysis showed that M1 and M2 macrophages differed between normal pregnancies and those in PE patients. A competing endogenous RNA (ceRNA) network was constructed, and proteins interacting with LEP were identified. RNA modification sites of LEP were also identified. Finally, the overexpression of LEP in PE was confirmed in clinical samples, HTR-8/SVneo cell line and PE mouse model. Conclusion: Our results indicate that LEP overexpression is associated with PE and may be a potential diagnostic marker and therapeutic target. |
format | Online Article Text |
id | pubmed-9846503 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98465032023-01-19 Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia Wang, Yajuan Bai, Xuening Guo, Xin Gao, Xiaoli Chen, Yuanyuan Li, Huanrong Fan, Wenjun Han, Cha Front Physiol Physiology Introduction: Preeclampsia (PE) is a gestational hypertensive disease with unclear pathogenesis. This study aimed to identify the genes that play an important role in determining the pathogenesis of PE using bioinformatics analysis and fundamental researches. Materials and methods: Datasets from the Gene Expression Omnibus (GEO) database were used to screen for differentially expressed genes (DEGs). The NCBI, SangerBox, and other databases were used to analyze the functions of the DEGs. Targetscan7, miRWalk, ENCORI, DIANA TOOLS, CircBank databases, and the Cytoscape tool were used to construct the lncRNA/circRNA-miRNA- LEP network. SRAMP, RPISeq, RBPsuite, and catRPAID were used to analyze the RNA modifications of LEP. Immune cell infiltration was analyzed using the dataset GSE75010. Placental tissues from normal pregnant women and PE patients were collected, screened for gene expression using reverse transcription quantitative polymerase chain reaction (RT-qPCR) and western blotting. The results were further verified in HTR-8/SVneo cell line hypoxia model and PE mouse model. Results: Our analyses revealed that LEP was significantly upregulated in eight datasets. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) analyses indicated that LEP was involved in the JAK/STAT signaling pathway, angiogenesis, and placental development. Immune cell infiltration analysis showed that M1 and M2 macrophages differed between normal pregnancies and those in PE patients. A competing endogenous RNA (ceRNA) network was constructed, and proteins interacting with LEP were identified. RNA modification sites of LEP were also identified. Finally, the overexpression of LEP in PE was confirmed in clinical samples, HTR-8/SVneo cell line and PE mouse model. Conclusion: Our results indicate that LEP overexpression is associated with PE and may be a potential diagnostic marker and therapeutic target. Frontiers Media S.A. 2023-01-04 /pmc/articles/PMC9846503/ /pubmed/36685185 http://dx.doi.org/10.3389/fphys.2022.1031950 Text en Copyright © 2023 Wang, Bai, Guo, Gao, Chen, Li, Fan and Han. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Physiology Wang, Yajuan Bai, Xuening Guo, Xin Gao, Xiaoli Chen, Yuanyuan Li, Huanrong Fan, Wenjun Han, Cha Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia |
title | Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia |
title_full | Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia |
title_fullStr | Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia |
title_full_unstemmed | Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia |
title_short | Bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia |
title_sort | bioinformatics analysis combined with clinical sample screening reveals that leptin may be a biomarker of preeclampsia |
topic | Physiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846503/ https://www.ncbi.nlm.nih.gov/pubmed/36685185 http://dx.doi.org/10.3389/fphys.2022.1031950 |
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