Cargando…

Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis

INTRODUCTION: Ferroptosis is associated with multiple pathophysiological processes. Inhibition of ferroptosis has received much concern for some diseases. Nonetheless, there is no study comprehensively illustrating functions of ferroptosis-related genes (FRGs) in psoriasis. METHODS: In this study, F...

Descripción completa

Detalles Bibliográficos
Autores principales: Wu, Man-Ning, Zhou, Dong-Mei, Jiang, Chun-Yan, Chen, Wei-Wen, Chen, Jia-Chi, Zou, Yue-Min, Han, Tao, Zhou, Li-Jia-Ming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846571/
https://www.ncbi.nlm.nih.gov/pubmed/36685512
http://dx.doi.org/10.3389/fimmu.2022.1104462
_version_ 1784871217288708096
author Wu, Man-Ning
Zhou, Dong-Mei
Jiang, Chun-Yan
Chen, Wei-Wen
Chen, Jia-Chi
Zou, Yue-Min
Han, Tao
Zhou, Li-Jia-Ming
author_facet Wu, Man-Ning
Zhou, Dong-Mei
Jiang, Chun-Yan
Chen, Wei-Wen
Chen, Jia-Chi
Zou, Yue-Min
Han, Tao
Zhou, Li-Jia-Ming
author_sort Wu, Man-Ning
collection PubMed
description INTRODUCTION: Ferroptosis is associated with multiple pathophysiological processes. Inhibition of ferroptosis has received much concern for some diseases. Nonetheless, there is no study comprehensively illustrating functions of ferroptosis-related genes (FRGs) in psoriasis. METHODS: In this study, FRGs together with psoriasis-associated data were obtained in Ferroptosis Database (FerrDb) and gene expression omnibus (GEO) database separately. This work identified altogether 199 psoriasis-associated DE-FRGs, and they were tightly associated with immunity and autophagy modulation. Thereafter, the present study utilized SVM-RFE and LASSO algorithms to identify NR5A2, CISD1, GCLC, PRKAA2, TRIB2, ABCC5, ACSF2, TIMM9, DCAF7, PEBP1, and MDM2 from those 199 DE-FRGs to be marker genes. As revealed by later functional annotation, the marker genes possibly had important effects on psoriasis through being involved in diverse psoriasis pathogenesis-related pathways such as cell cycle, toll-like receptor (TLR), chemokine, and nod-like receptor (NLR) pathways. Moreover, altogether 37 drugs that targeted 11 marker genes were acquired. Besides, based on CIBERSORT analysis, alterations of immune microenvironment in psoriasis cases were possibly associated with PRKAA2, PEBP1, CISD1, and ACSF2. DISCUSSION: Taken together, this work established the diagnostic potency and shed more lights on psoriasis-related mechanism. More investigations are warranted to validate its value in diagnosing psoriasis before it is applied in clinic.
format Online
Article
Text
id pubmed-9846571
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-98465712023-01-19 Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis Wu, Man-Ning Zhou, Dong-Mei Jiang, Chun-Yan Chen, Wei-Wen Chen, Jia-Chi Zou, Yue-Min Han, Tao Zhou, Li-Jia-Ming Front Immunol Immunology INTRODUCTION: Ferroptosis is associated with multiple pathophysiological processes. Inhibition of ferroptosis has received much concern for some diseases. Nonetheless, there is no study comprehensively illustrating functions of ferroptosis-related genes (FRGs) in psoriasis. METHODS: In this study, FRGs together with psoriasis-associated data were obtained in Ferroptosis Database (FerrDb) and gene expression omnibus (GEO) database separately. This work identified altogether 199 psoriasis-associated DE-FRGs, and they were tightly associated with immunity and autophagy modulation. Thereafter, the present study utilized SVM-RFE and LASSO algorithms to identify NR5A2, CISD1, GCLC, PRKAA2, TRIB2, ABCC5, ACSF2, TIMM9, DCAF7, PEBP1, and MDM2 from those 199 DE-FRGs to be marker genes. As revealed by later functional annotation, the marker genes possibly had important effects on psoriasis through being involved in diverse psoriasis pathogenesis-related pathways such as cell cycle, toll-like receptor (TLR), chemokine, and nod-like receptor (NLR) pathways. Moreover, altogether 37 drugs that targeted 11 marker genes were acquired. Besides, based on CIBERSORT analysis, alterations of immune microenvironment in psoriasis cases were possibly associated with PRKAA2, PEBP1, CISD1, and ACSF2. DISCUSSION: Taken together, this work established the diagnostic potency and shed more lights on psoriasis-related mechanism. More investigations are warranted to validate its value in diagnosing psoriasis before it is applied in clinic. Frontiers Media S.A. 2023-01-04 /pmc/articles/PMC9846571/ /pubmed/36685512 http://dx.doi.org/10.3389/fimmu.2022.1104462 Text en Copyright © 2023 Wu, Zhou, Jiang, Chen, Chen, Zou, Han and Zhou https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Wu, Man-Ning
Zhou, Dong-Mei
Jiang, Chun-Yan
Chen, Wei-Wen
Chen, Jia-Chi
Zou, Yue-Min
Han, Tao
Zhou, Li-Jia-Ming
Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis
title Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis
title_full Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis
title_fullStr Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis
title_full_unstemmed Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis
title_short Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis
title_sort genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846571/
https://www.ncbi.nlm.nih.gov/pubmed/36685512
http://dx.doi.org/10.3389/fimmu.2022.1104462
work_keys_str_mv AT wumanning geneticanalysisofpotentialbiomarkersandtherapeutictargetsinferroptosisfrompsoriasis
AT zhoudongmei geneticanalysisofpotentialbiomarkersandtherapeutictargetsinferroptosisfrompsoriasis
AT jiangchunyan geneticanalysisofpotentialbiomarkersandtherapeutictargetsinferroptosisfrompsoriasis
AT chenweiwen geneticanalysisofpotentialbiomarkersandtherapeutictargetsinferroptosisfrompsoriasis
AT chenjiachi geneticanalysisofpotentialbiomarkersandtherapeutictargetsinferroptosisfrompsoriasis
AT zouyuemin geneticanalysisofpotentialbiomarkersandtherapeutictargetsinferroptosisfrompsoriasis
AT hantao geneticanalysisofpotentialbiomarkersandtherapeutictargetsinferroptosisfrompsoriasis
AT zhoulijiaming geneticanalysisofpotentialbiomarkersandtherapeutictargetsinferroptosisfrompsoriasis