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Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis
INTRODUCTION: Ferroptosis is associated with multiple pathophysiological processes. Inhibition of ferroptosis has received much concern for some diseases. Nonetheless, there is no study comprehensively illustrating functions of ferroptosis-related genes (FRGs) in psoriasis. METHODS: In this study, F...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846571/ https://www.ncbi.nlm.nih.gov/pubmed/36685512 http://dx.doi.org/10.3389/fimmu.2022.1104462 |
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author | Wu, Man-Ning Zhou, Dong-Mei Jiang, Chun-Yan Chen, Wei-Wen Chen, Jia-Chi Zou, Yue-Min Han, Tao Zhou, Li-Jia-Ming |
author_facet | Wu, Man-Ning Zhou, Dong-Mei Jiang, Chun-Yan Chen, Wei-Wen Chen, Jia-Chi Zou, Yue-Min Han, Tao Zhou, Li-Jia-Ming |
author_sort | Wu, Man-Ning |
collection | PubMed |
description | INTRODUCTION: Ferroptosis is associated with multiple pathophysiological processes. Inhibition of ferroptosis has received much concern for some diseases. Nonetheless, there is no study comprehensively illustrating functions of ferroptosis-related genes (FRGs) in psoriasis. METHODS: In this study, FRGs together with psoriasis-associated data were obtained in Ferroptosis Database (FerrDb) and gene expression omnibus (GEO) database separately. This work identified altogether 199 psoriasis-associated DE-FRGs, and they were tightly associated with immunity and autophagy modulation. Thereafter, the present study utilized SVM-RFE and LASSO algorithms to identify NR5A2, CISD1, GCLC, PRKAA2, TRIB2, ABCC5, ACSF2, TIMM9, DCAF7, PEBP1, and MDM2 from those 199 DE-FRGs to be marker genes. As revealed by later functional annotation, the marker genes possibly had important effects on psoriasis through being involved in diverse psoriasis pathogenesis-related pathways such as cell cycle, toll-like receptor (TLR), chemokine, and nod-like receptor (NLR) pathways. Moreover, altogether 37 drugs that targeted 11 marker genes were acquired. Besides, based on CIBERSORT analysis, alterations of immune microenvironment in psoriasis cases were possibly associated with PRKAA2, PEBP1, CISD1, and ACSF2. DISCUSSION: Taken together, this work established the diagnostic potency and shed more lights on psoriasis-related mechanism. More investigations are warranted to validate its value in diagnosing psoriasis before it is applied in clinic. |
format | Online Article Text |
id | pubmed-9846571 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98465712023-01-19 Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis Wu, Man-Ning Zhou, Dong-Mei Jiang, Chun-Yan Chen, Wei-Wen Chen, Jia-Chi Zou, Yue-Min Han, Tao Zhou, Li-Jia-Ming Front Immunol Immunology INTRODUCTION: Ferroptosis is associated with multiple pathophysiological processes. Inhibition of ferroptosis has received much concern for some diseases. Nonetheless, there is no study comprehensively illustrating functions of ferroptosis-related genes (FRGs) in psoriasis. METHODS: In this study, FRGs together with psoriasis-associated data were obtained in Ferroptosis Database (FerrDb) and gene expression omnibus (GEO) database separately. This work identified altogether 199 psoriasis-associated DE-FRGs, and they were tightly associated with immunity and autophagy modulation. Thereafter, the present study utilized SVM-RFE and LASSO algorithms to identify NR5A2, CISD1, GCLC, PRKAA2, TRIB2, ABCC5, ACSF2, TIMM9, DCAF7, PEBP1, and MDM2 from those 199 DE-FRGs to be marker genes. As revealed by later functional annotation, the marker genes possibly had important effects on psoriasis through being involved in diverse psoriasis pathogenesis-related pathways such as cell cycle, toll-like receptor (TLR), chemokine, and nod-like receptor (NLR) pathways. Moreover, altogether 37 drugs that targeted 11 marker genes were acquired. Besides, based on CIBERSORT analysis, alterations of immune microenvironment in psoriasis cases were possibly associated with PRKAA2, PEBP1, CISD1, and ACSF2. DISCUSSION: Taken together, this work established the diagnostic potency and shed more lights on psoriasis-related mechanism. More investigations are warranted to validate its value in diagnosing psoriasis before it is applied in clinic. Frontiers Media S.A. 2023-01-04 /pmc/articles/PMC9846571/ /pubmed/36685512 http://dx.doi.org/10.3389/fimmu.2022.1104462 Text en Copyright © 2023 Wu, Zhou, Jiang, Chen, Chen, Zou, Han and Zhou https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Wu, Man-Ning Zhou, Dong-Mei Jiang, Chun-Yan Chen, Wei-Wen Chen, Jia-Chi Zou, Yue-Min Han, Tao Zhou, Li-Jia-Ming Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis |
title | Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis |
title_full | Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis |
title_fullStr | Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis |
title_full_unstemmed | Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis |
title_short | Genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis |
title_sort | genetic analysis of potential biomarkers and therapeutic targets in ferroptosis from psoriasis |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846571/ https://www.ncbi.nlm.nih.gov/pubmed/36685512 http://dx.doi.org/10.3389/fimmu.2022.1104462 |
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