Cargando…

PTMint database of experimentally verified PTM regulation on protein–protein interaction

MOTIVATION: Post-translational modification (PTM) is an important biochemical process. which includes six most well-studied types: phosphorylation, acetylation, methylation, sumoylation, ubiquitylation and glycosylation. PTM is involved in various cell signaling pathways and biological processes. Ab...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hong, Xiaokun, Li, Ningshan, Lv, Jiyang, Zhang, Yan, Li, Jing, Zhang, Jian, Chen, Hai-Feng
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2022
Materias:	Original Paper
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9848059/ https://www.ncbi.nlm.nih.gov/pubmed/36548389 http://dx.doi.org/10.1093/bioinformatics/btac823

Ejemplares similares

qPTM: an updated database for PTM dynamics in human, mouse, rat and yeast
por: Yu, Kai, et al.
Publicado: (2022)

PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins
por: Craveur, Pierrick, et al.
Publicado: (2014)

dbPTM in 2022: an updated database for exploring regulatory networks and functional associations of protein post-translational modifications
por: Li, Zhongyan, et al.
Publicado: (2021)

Utilizing Optimized Tools to Investigate PTM Crosstalk: Identifying Potential PTM Crosstalk of Acetylated Mitochondrial Proteins
por: Horita, Henrick, et al.
Publicado: (2018)

topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins
por: Su, Min-Gang, et al.
Publicado: (2014)

A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database
por: Jiménez, José L, et al.
Publicado: (2007)

Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins
por: Diella, Francesca, et al.
Publicado: (2004)

IRESite: the database of experimentally verified IRES structures ()
por: Mokrejš, Martin, et al.
Publicado: (2006)

dbPTM: an information repository of protein post-translational modification
por: Lee, Tzong-Yi, et al.
Publicado: (2006)

HTRIdb: an open-access database for experimentally verified human transcriptional regulation interactions
por: Bovolenta, Luiz A, et al.
Publicado: (2012)

SysPTM 2.0: an updated systematic resource for post-translational modification
por: Li, Jing, et al.
Publicado: (2014)

RPdb: a database of experimentally verified cellular reprogramming records
por: Shen, Yi, et al.
Publicado: (2015)

PPARgene: A Database of Experimentally Verified and Computationally Predicted PPAR Target Genes
por: Fang, Li, et al.
Publicado: (2016)

Decoding the PTM-switchboard of Notch
por: Antfolk, Daniel, et al.
Publicado: (2019)

hUbiquitome: a database of experimentally verified ubiquitination cascades in humans
por: Du, Yipeng, et al.
Publicado: (2011)

Protein-Peptide Turnover Profiling reveals the order of PTM addition and removal during protein maturation
por: Hammarén, Henrik M., et al.
Publicado: (2022)

Isobar(PTM): A software tool for the quantitative analysis of post-translationally modified proteins()
por: Breitwieser, Florian P., et al.
Publicado: (2013)

PTM-Switchboard—a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes
por: Everett, Logan, et al.
Publicado: (2009)

PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae
por: Stark, Chris, et al.
Publicado: (2010)

Quantitative profiling of PTM stoichiometry by resolvable mass tags
por: Chen, Ying, et al.
Publicado: (2022)

Cells, shared memory and breaking the PTM code
por: Creixell, Pau, et al.
Publicado: (2012)

FAIMS Enhances the Detection of PTM Crosstalk Sites
por: Adoni, Kish R., et al.
Publicado: (2022)

Vienna-PTM web server: a toolkit for MD simulations of protein post-translational modifications
por: Margreitter, Christian, et al.
Publicado: (2013)

dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins
por: Huang, Kai-Yao, et al.
Publicado: (2016)

Improved Protein and PTM Characterization with a Practical Electron-Based Fragmentation on Q-TOF Instruments
por: Beckman, Joseph S., et al.
Publicado: (2021)

The Integration of Proteome-Wide PTM Data with Protein Structural and Sequence Features Identifies Phosphorylations that Mediate 14-3-3 Interactions
por: Egbert, C. M., et al.
Publicado: (2023)

Verifiability on the run: an experimental study on the verifiability approach to malingered symptoms
por: Boskovic, Irena, et al.
Publicado: (2018)

ProSight PTM 2.0: improved protein identification and characterization for top down mass spectrometry
por: Zamdborg, Leonid, et al.
Publicado: (2007)

Systematic analysis of non-structural protein features for the prediction of PTM function potential by artificial neural networks
por: Dewhurst, Henry M., et al.
Publicado: (2017)

Deciphering the PTM codes of the tumor suppressor p53
por: Wen, Jia, et al.
Publicado: (2021)

miPepBase: A Database of Experimentally Verified Peptides Involved in Molecular Mimicry
por: Garg, Anjali, et al.
Publicado: (2017)

HMNPPID—human malignant neoplasm protein–protein interaction database
por: Li, Qingqing, et al.
Publicado: (2019)

Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions
por: Ozawa, Yosuke, et al.
Publicado: (2010)

OCGene: a database of experimentally verified ovarian cancer-related genes with precomputed regulation information
por: Liu, Y, et al.
Publicado: (2015)

Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases
por: Shoemaker, Benjamin A, et al.
Publicado: (2007)

Bioinformatic and Proteomic Analysis of Bulk Histones Reveals PTM Crosstalk and Chromatin Features
por: Zhang, Chunchao, et al.
Publicado: (2014)

MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics
por: Polasky, Daniel A., et al.
Publicado: (2023)

SPIDer: Saccharomyces protein-protein interaction database
por: Wu, Xiaomei, et al.
Publicado: (2006)

OGT Protein Interaction Network (OGT-PIN): A Curated Database of Experimentally Identified Interaction Proteins of OGT
por: Ma, Junfeng, et al.
Publicado: (2021)

APID database: redefining protein–protein interaction experimental evidences and binary interactomes
por: Alonso-López, Diego, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_chnc9panouit3ha9btcmstinfc