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Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae)
Ajuga spectabilis Nakai is a Korean endemic species in Lamiaceae. In spite of its importance, genomic studies are not performed on this species. Here, we report the complete plastid genome sequences of A. spectabilis, which will provide valuable information for its natural conservation and future st...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9848336/ https://www.ncbi.nlm.nih.gov/pubmed/36685657 http://dx.doi.org/10.1080/23802359.2022.2156258 |
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author | Kamra, Kashish Jung, Joonhyung Kim, Hyuk-Jin Yoon, Chang-Young Kim, Joo-Hwan |
author_facet | Kamra, Kashish Jung, Joonhyung Kim, Hyuk-Jin Yoon, Chang-Young Kim, Joo-Hwan |
author_sort | Kamra, Kashish |
collection | PubMed |
description | Ajuga spectabilis Nakai is a Korean endemic species in Lamiaceae. In spite of its importance, genomic studies are not performed on this species. Here, we report the complete plastid genome sequences of A. spectabilis, which will provide valuable information for its natural conservation and future studies for the plastid genome evolution. The plastid genome is 150,417 bp in length, containing a large single-copy region (LSC) of 82,140 bp and a small single-copy (SSC) region of 17,165 bp which are separated by a pair of inverted repeats (IR) of 25,556 bp. It encodes 113 genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The overall GC content is 38.3%, and those in the LSC, SSC, and IR regions are 36.4%, 32.2%, and 43.3%, respectively, which is consistent with other Ajuga species. Our phylogenetic analysis revealed that A. spectabilis formed a close relationship with A. ciliata and A. decumbens. |
format | Online Article Text |
id | pubmed-9848336 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-98483362023-01-19 Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae) Kamra, Kashish Jung, Joonhyung Kim, Hyuk-Jin Yoon, Chang-Young Kim, Joo-Hwan Mitochondrial DNA B Resour Plastome Announcement Ajuga spectabilis Nakai is a Korean endemic species in Lamiaceae. In spite of its importance, genomic studies are not performed on this species. Here, we report the complete plastid genome sequences of A. spectabilis, which will provide valuable information for its natural conservation and future studies for the plastid genome evolution. The plastid genome is 150,417 bp in length, containing a large single-copy region (LSC) of 82,140 bp and a small single-copy (SSC) region of 17,165 bp which are separated by a pair of inverted repeats (IR) of 25,556 bp. It encodes 113 genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The overall GC content is 38.3%, and those in the LSC, SSC, and IR regions are 36.4%, 32.2%, and 43.3%, respectively, which is consistent with other Ajuga species. Our phylogenetic analysis revealed that A. spectabilis formed a close relationship with A. ciliata and A. decumbens. Taylor & Francis 2023-01-15 /pmc/articles/PMC9848336/ /pubmed/36685657 http://dx.doi.org/10.1080/23802359.2022.2156258 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Kamra, Kashish Jung, Joonhyung Kim, Hyuk-Jin Yoon, Chang-Young Kim, Joo-Hwan Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae) |
title | Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae) |
title_full | Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae) |
title_fullStr | Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae) |
title_full_unstemmed | Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae) |
title_short | Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae) |
title_sort | characterization of the complete plastid genome of korean endemic, ajuga spectabilis nakai (lamiaceae) |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9848336/ https://www.ncbi.nlm.nih.gov/pubmed/36685657 http://dx.doi.org/10.1080/23802359.2022.2156258 |
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