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Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae)

Ajuga spectabilis Nakai is a Korean endemic species in Lamiaceae. In spite of its importance, genomic studies are not performed on this species. Here, we report the complete plastid genome sequences of A. spectabilis, which will provide valuable information for its natural conservation and future st...

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Autores principales: Kamra, Kashish, Jung, Joonhyung, Kim, Hyuk-Jin, Yoon, Chang-Young, Kim, Joo-Hwan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9848336/
https://www.ncbi.nlm.nih.gov/pubmed/36685657
http://dx.doi.org/10.1080/23802359.2022.2156258
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author Kamra, Kashish
Jung, Joonhyung
Kim, Hyuk-Jin
Yoon, Chang-Young
Kim, Joo-Hwan
author_facet Kamra, Kashish
Jung, Joonhyung
Kim, Hyuk-Jin
Yoon, Chang-Young
Kim, Joo-Hwan
author_sort Kamra, Kashish
collection PubMed
description Ajuga spectabilis Nakai is a Korean endemic species in Lamiaceae. In spite of its importance, genomic studies are not performed on this species. Here, we report the complete plastid genome sequences of A. spectabilis, which will provide valuable information for its natural conservation and future studies for the plastid genome evolution. The plastid genome is 150,417 bp in length, containing a large single-copy region (LSC) of 82,140 bp and a small single-copy (SSC) region of 17,165 bp which are separated by a pair of inverted repeats (IR) of 25,556 bp. It encodes 113 genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The overall GC content is 38.3%, and those in the LSC, SSC, and IR regions are 36.4%, 32.2%, and 43.3%, respectively, which is consistent with other Ajuga species. Our phylogenetic analysis revealed that A. spectabilis formed a close relationship with A. ciliata and A. decumbens.
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spelling pubmed-98483362023-01-19 Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae) Kamra, Kashish Jung, Joonhyung Kim, Hyuk-Jin Yoon, Chang-Young Kim, Joo-Hwan Mitochondrial DNA B Resour Plastome Announcement Ajuga spectabilis Nakai is a Korean endemic species in Lamiaceae. In spite of its importance, genomic studies are not performed on this species. Here, we report the complete plastid genome sequences of A. spectabilis, which will provide valuable information for its natural conservation and future studies for the plastid genome evolution. The plastid genome is 150,417 bp in length, containing a large single-copy region (LSC) of 82,140 bp and a small single-copy (SSC) region of 17,165 bp which are separated by a pair of inverted repeats (IR) of 25,556 bp. It encodes 113 genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The overall GC content is 38.3%, and those in the LSC, SSC, and IR regions are 36.4%, 32.2%, and 43.3%, respectively, which is consistent with other Ajuga species. Our phylogenetic analysis revealed that A. spectabilis formed a close relationship with A. ciliata and A. decumbens. Taylor & Francis 2023-01-15 /pmc/articles/PMC9848336/ /pubmed/36685657 http://dx.doi.org/10.1080/23802359.2022.2156258 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Kamra, Kashish
Jung, Joonhyung
Kim, Hyuk-Jin
Yoon, Chang-Young
Kim, Joo-Hwan
Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae)
title Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae)
title_full Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae)
title_fullStr Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae)
title_full_unstemmed Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae)
title_short Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae)
title_sort characterization of the complete plastid genome of korean endemic, ajuga spectabilis nakai (lamiaceae)
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9848336/
https://www.ncbi.nlm.nih.gov/pubmed/36685657
http://dx.doi.org/10.1080/23802359.2022.2156258
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