The complete chloroplast genome of Urtica angustifolia Fisch. ex Hornem. (Urticaceae), an important kind of traditional Chinese medicine in China

Urtica angustifolia Fisch. ex Hornem. is an important Chinese medicine. Here, the complete chloroplast genome of U. angustifolia was assembled and characterized. The length of the chloroplast genome was 146,679 bp with the typical quadripartite structure, containing two inverted repeats (IRs) of 24,...

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Autores principales: Liu, Mu, Lu, Jinsen, Li, Baoyong, Zhang, Lvshui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
MitoGenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9848352/
https://www.ncbi.nlm.nih.gov/pubmed/36685643
http://dx.doi.org/10.1080/23802359.2022.2057246
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author Liu, Mu
Lu, Jinsen
Li, Baoyong
Zhang, Lvshui
author_facet Liu, Mu
Lu, Jinsen
Li, Baoyong
Zhang, Lvshui
author_sort Liu, Mu
collection PubMed
description Urtica angustifolia Fisch. ex Hornem. is an important Chinese medicine. Here, the complete chloroplast genome of U. angustifolia was assembled and characterized. The length of the chloroplast genome was 146,679 bp with the typical quadripartite structure, containing two inverted repeats (IRs) of 24,595 bp separated by a large single-copy (LSC) region of 79,820 bp and a small single-copy (SSC) region of 17,669 bp. The whole chloroplast genome of U. angustifolia contains 111 genes, including 77 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. Nucleotide variability analysis identified three hotspot regions (trnK-rps16, ndhF-rps32, and ycf1b) for genomic divergence and 52 simple sequence repeats. Phylogenetic analysis based on the complete chloroplast genomes exhibited that U. angustifolia formed a clade with Urtica lobatifolia and Hesperocnide tenella.
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spelling pubmed-98483522023-01-19 The complete chloroplast genome of Urtica angustifolia Fisch. ex Hornem. (Urticaceae), an important kind of traditional Chinese medicine in China Liu, Mu Lu, Jinsen Li, Baoyong Zhang, Lvshui Mitochondrial DNA B Resour MitoGenome Announcement Urtica angustifolia Fisch. ex Hornem. is an important Chinese medicine. Here, the complete chloroplast genome of U. angustifolia was assembled and characterized. The length of the chloroplast genome was 146,679 bp with the typical quadripartite structure, containing two inverted repeats (IRs) of 24,595 bp separated by a large single-copy (LSC) region of 79,820 bp and a small single-copy (SSC) region of 17,669 bp. The whole chloroplast genome of U. angustifolia contains 111 genes, including 77 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. Nucleotide variability analysis identified three hotspot regions (trnK-rps16, ndhF-rps32, and ycf1b) for genomic divergence and 52 simple sequence repeats. Phylogenetic analysis based on the complete chloroplast genomes exhibited that U. angustifolia formed a clade with Urtica lobatifolia and Hesperocnide tenella. Taylor & Francis 2023-01-15 /pmc/articles/PMC9848352/ /pubmed/36685643 http://dx.doi.org/10.1080/23802359.2022.2057246 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle MitoGenome Announcement
Liu, Mu
Lu, Jinsen
Li, Baoyong
Zhang, Lvshui
The complete chloroplast genome of Urtica angustifolia Fisch. ex Hornem. (Urticaceae), an important kind of traditional Chinese medicine in China
title The complete chloroplast genome of Urtica angustifolia Fisch. ex Hornem. (Urticaceae), an important kind of traditional Chinese medicine in China
title_full The complete chloroplast genome of Urtica angustifolia Fisch. ex Hornem. (Urticaceae), an important kind of traditional Chinese medicine in China
title_fullStr The complete chloroplast genome of Urtica angustifolia Fisch. ex Hornem. (Urticaceae), an important kind of traditional Chinese medicine in China
title_full_unstemmed The complete chloroplast genome of Urtica angustifolia Fisch. ex Hornem. (Urticaceae), an important kind of traditional Chinese medicine in China
title_short The complete chloroplast genome of Urtica angustifolia Fisch. ex Hornem. (Urticaceae), an important kind of traditional Chinese medicine in China
title_sort complete chloroplast genome of urtica angustifolia fisch. ex hornem. (urticaceae), an important kind of traditional chinese medicine in china
topic MitoGenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9848352/
https://www.ncbi.nlm.nih.gov/pubmed/36685643
http://dx.doi.org/10.1080/23802359.2022.2057246
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