Cargando…

Ali-Bey - an open collaborative georeferencing web application

BACKGROUND: Georeferencing preserved specimens represents a major effort at the Museu de Ciències Naturals de Barcelona (MCNB), given the available resources and limited staff that can be allocated to the task. Georeferencing is a labour-intensive and hard-to-automate task that requires software too...

Descripción completa

Detalles Bibliográficos
Autores principales: Marcer, Arnald, Escobar, Agustí, Garcia-Font, Víctor, Uribe, Francesc
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9848523/
https://www.ncbi.nlm.nih.gov/pubmed/36761501
http://dx.doi.org/10.3897/BDJ.10.e81282
_version_ 1784871731711705088
author Marcer, Arnald
Escobar, Agustí
Garcia-Font, Víctor
Uribe, Francesc
author_facet Marcer, Arnald
Escobar, Agustí
Garcia-Font, Víctor
Uribe, Francesc
author_sort Marcer, Arnald
collection PubMed
description BACKGROUND: Georeferencing preserved specimens represents a major effort at the Museu de Ciències Naturals de Barcelona (MCNB), given the available resources and limited staff that can be allocated to the task. Georeferencing is a labour-intensive and hard-to-automate task that requires software tools that can help in making it as efficient as possible. The tool we present, Ali-Bey, has been slowly developed over 15 years and its functionalities have been gradually built in a process of development, testing, use in production and refinement, rather than as a single development cycle out of a comprehensive specifications requirement document. At the start, the MCNB could not find a tool that fully satisfied the requirements listed as essential and made the decision to develop a custom tool. At the end, the initiative has proved successful since it has delivered a new georeferencing tool that meets the MCNB's needs, all in a context of yearly scarce availability of funds. The tool has been gradually matured and developed over the years, in line with the scarce financing. Only recently, after reaching a notable set of novel features, we considered to release it as an open-source project. The MCNB has supported its development up until this date and decided to open it in order to give the NHC community the opportunity to contribute to its development. NEW INFORMATION: We present the software tool Ali-Bey that provides new functionality for the georeferencing of specimens in Natural History Collections, namely the possibility of cooperation between different institutions, the traceability of georeferences and the capability of managing different versions of a same site name, namely for historical reasons. The tool is an open-source web application implemented in Python and the Django framework that leverages other commonly-used specialised geodatabase and map server tools. An API provides access to the geodatabase to externally-developed tools. In addition, for an easy installation, the tool is provided as a multi-container Docker application.
format Online
Article
Text
id pubmed-9848523
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Pensoft Publishers
record_format MEDLINE/PubMed
spelling pubmed-98485232023-02-08 Ali-Bey - an open collaborative georeferencing web application Marcer, Arnald Escobar, Agustí Garcia-Font, Víctor Uribe, Francesc Biodivers Data J Software Description BACKGROUND: Georeferencing preserved specimens represents a major effort at the Museu de Ciències Naturals de Barcelona (MCNB), given the available resources and limited staff that can be allocated to the task. Georeferencing is a labour-intensive and hard-to-automate task that requires software tools that can help in making it as efficient as possible. The tool we present, Ali-Bey, has been slowly developed over 15 years and its functionalities have been gradually built in a process of development, testing, use in production and refinement, rather than as a single development cycle out of a comprehensive specifications requirement document. At the start, the MCNB could not find a tool that fully satisfied the requirements listed as essential and made the decision to develop a custom tool. At the end, the initiative has proved successful since it has delivered a new georeferencing tool that meets the MCNB's needs, all in a context of yearly scarce availability of funds. The tool has been gradually matured and developed over the years, in line with the scarce financing. Only recently, after reaching a notable set of novel features, we considered to release it as an open-source project. The MCNB has supported its development up until this date and decided to open it in order to give the NHC community the opportunity to contribute to its development. NEW INFORMATION: We present the software tool Ali-Bey that provides new functionality for the georeferencing of specimens in Natural History Collections, namely the possibility of cooperation between different institutions, the traceability of georeferences and the capability of managing different versions of a same site name, namely for historical reasons. The tool is an open-source web application implemented in Python and the Django framework that leverages other commonly-used specialised geodatabase and map server tools. An API provides access to the geodatabase to externally-developed tools. In addition, for an easy installation, the tool is provided as a multi-container Docker application. Pensoft Publishers 2022-04-28 /pmc/articles/PMC9848523/ /pubmed/36761501 http://dx.doi.org/10.3897/BDJ.10.e81282 Text en Arnald Marcer, Agustí Escobar, Víctor Garcia-Font, Francesc Uribe https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Software Description
Marcer, Arnald
Escobar, Agustí
Garcia-Font, Víctor
Uribe, Francesc
Ali-Bey - an open collaborative georeferencing web application
title Ali-Bey - an open collaborative georeferencing web application
title_full Ali-Bey - an open collaborative georeferencing web application
title_fullStr Ali-Bey - an open collaborative georeferencing web application
title_full_unstemmed Ali-Bey - an open collaborative georeferencing web application
title_short Ali-Bey - an open collaborative georeferencing web application
title_sort ali-bey - an open collaborative georeferencing web application
topic Software Description
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9848523/
https://www.ncbi.nlm.nih.gov/pubmed/36761501
http://dx.doi.org/10.3897/BDJ.10.e81282
work_keys_str_mv AT marcerarnald alibeyanopencollaborativegeoreferencingwebapplication
AT escobaragusti alibeyanopencollaborativegeoreferencingwebapplication
AT garciafontvictor alibeyanopencollaborativegeoreferencingwebapplication
AT uribefrancesc alibeyanopencollaborativegeoreferencingwebapplication