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Research Infrastructure Contact Zones: a framework and dataset to characterise the activities of major biodiversity informatics initiatives
BACKGROUND: The landscape of biodiversity data infrastructures and organisations is complex and fragmented. Many occupy specialised niches representing narrow segments of the multidimensional biodiversity informatics space, while others operate across a broad front, but differ from others by data ty...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9848541/ https://www.ncbi.nlm.nih.gov/pubmed/36761622 http://dx.doi.org/10.3897/BDJ.10.e82953 |
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author | Smith, Vincent Stuart French, Lisa Vincent, Sarah Woodburn, Matt Addink, Wouter Arvanitidis, Christos Bánki, Olaf Casino, Ana Dusoulier, Francois Glöckler, Falko Hobern, Donald Kalfatovic, Martin R. Koureas, Dimitrios Mergen, Patricia Miller, Joe Schulman, Leif Juslén, Aino |
author_facet | Smith, Vincent Stuart French, Lisa Vincent, Sarah Woodburn, Matt Addink, Wouter Arvanitidis, Christos Bánki, Olaf Casino, Ana Dusoulier, Francois Glöckler, Falko Hobern, Donald Kalfatovic, Martin R. Koureas, Dimitrios Mergen, Patricia Miller, Joe Schulman, Leif Juslén, Aino |
author_sort | Smith, Vincent Stuart |
collection | PubMed |
description | BACKGROUND: The landscape of biodiversity data infrastructures and organisations is complex and fragmented. Many occupy specialised niches representing narrow segments of the multidimensional biodiversity informatics space, while others operate across a broad front, but differ from others by data type(s) handled, their geographic scope and the life cycle phase(s) of the data they support. In an effort to characterise the various dimensions of the biodiversity informatics landscape, we developed a framework and dataset to survey these dimensions for ten organisations (DiSSCo, GBIF, iBOL, Catalogue of Life, iNaturalist, Biodiversity Heritage Library, GeoCASe, LifeWatch, eLTER ELIXIR), relative to both their current activities and long-term strategic ambitions. NEW INFORMATION: The survey assessed the contact between the infrastructure organisations by capturing the breadth of activities for each infrastructure across five categories (data, standards, software, hardware and policy), for nine types of data (specimens, collection descriptions, opportunistic observations, systematic observations, taxonomies, traits, geological data, molecular data and literature) and for seven phases of activity (creation, aggregation, access, annotation, interlinkage, analysis and synthesis). This generated a dataset of 6,300 verified observations, which have been scored and validated by leading members of each infrastructure organisation. The resulting data allow high-level questions about the overall biodiversity informatics landscape to be addressed, including the greatest gaps and contact between organisations. |
format | Online Article Text |
id | pubmed-9848541 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-98485412023-02-08 Research Infrastructure Contact Zones: a framework and dataset to characterise the activities of major biodiversity informatics initiatives Smith, Vincent Stuart French, Lisa Vincent, Sarah Woodburn, Matt Addink, Wouter Arvanitidis, Christos Bánki, Olaf Casino, Ana Dusoulier, Francois Glöckler, Falko Hobern, Donald Kalfatovic, Martin R. Koureas, Dimitrios Mergen, Patricia Miller, Joe Schulman, Leif Juslén, Aino Biodivers Data J Data Paper (Biosciences) BACKGROUND: The landscape of biodiversity data infrastructures and organisations is complex and fragmented. Many occupy specialised niches representing narrow segments of the multidimensional biodiversity informatics space, while others operate across a broad front, but differ from others by data type(s) handled, their geographic scope and the life cycle phase(s) of the data they support. In an effort to characterise the various dimensions of the biodiversity informatics landscape, we developed a framework and dataset to survey these dimensions for ten organisations (DiSSCo, GBIF, iBOL, Catalogue of Life, iNaturalist, Biodiversity Heritage Library, GeoCASe, LifeWatch, eLTER ELIXIR), relative to both their current activities and long-term strategic ambitions. NEW INFORMATION: The survey assessed the contact between the infrastructure organisations by capturing the breadth of activities for each infrastructure across five categories (data, standards, software, hardware and policy), for nine types of data (specimens, collection descriptions, opportunistic observations, systematic observations, taxonomies, traits, geological data, molecular data and literature) and for seven phases of activity (creation, aggregation, access, annotation, interlinkage, analysis and synthesis). This generated a dataset of 6,300 verified observations, which have been scored and validated by leading members of each infrastructure organisation. The resulting data allow high-level questions about the overall biodiversity informatics landscape to be addressed, including the greatest gaps and contact between organisations. Pensoft Publishers 2022-09-16 /pmc/articles/PMC9848541/ /pubmed/36761622 http://dx.doi.org/10.3897/BDJ.10.e82953 Text en Vincent Stuart Smith, Lisa French, Sarah Vincent, Matt Woodburn, Wouter Addink, Christos Arvanitidis, Olaf Bánki, Ana Casino, Francois Dusoulier, Falko Glöckler, Donald Hobern, Martin R. Kalfatovic, Dimitrios Koureas, Patricia Mergen, Joe Miller, Leif Schulman, Aino Juslén https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Data Paper (Biosciences) Smith, Vincent Stuart French, Lisa Vincent, Sarah Woodburn, Matt Addink, Wouter Arvanitidis, Christos Bánki, Olaf Casino, Ana Dusoulier, Francois Glöckler, Falko Hobern, Donald Kalfatovic, Martin R. Koureas, Dimitrios Mergen, Patricia Miller, Joe Schulman, Leif Juslén, Aino Research Infrastructure Contact Zones: a framework and dataset to characterise the activities of major biodiversity informatics initiatives |
title | Research Infrastructure Contact Zones: a framework and dataset to characterise the activities of major biodiversity informatics initiatives |
title_full | Research Infrastructure Contact Zones: a framework and dataset to characterise the activities of major biodiversity informatics initiatives |
title_fullStr | Research Infrastructure Contact Zones: a framework and dataset to characterise the activities of major biodiversity informatics initiatives |
title_full_unstemmed | Research Infrastructure Contact Zones: a framework and dataset to characterise the activities of major biodiversity informatics initiatives |
title_short | Research Infrastructure Contact Zones: a framework and dataset to characterise the activities of major biodiversity informatics initiatives |
title_sort | research infrastructure contact zones: a framework and dataset to characterise the activities of major biodiversity informatics initiatives |
topic | Data Paper (Biosciences) |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9848541/ https://www.ncbi.nlm.nih.gov/pubmed/36761622 http://dx.doi.org/10.3897/BDJ.10.e82953 |
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