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Results from the second WHO external quality assessment for the molecular detection of respiratory syncytial virus, 2019–2020
BACKGROUND: External quality assessments (EQAs) for the molecular detection of human respiratory syncytial virus (RSV) are necessary to ensure the standardisation of reliable results. The Phase II, 2019–2020 World Health Organization (WHO) RSV EQA included 28 laboratories in 26 countries. The EQA pa...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9849090/ https://www.ncbi.nlm.nih.gov/pubmed/36824313 http://dx.doi.org/10.1111/irv.13073 |
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author | Williams, Thomas Jackson, Sandra Barr, Ian Bi, Shabana Bhiman, Jinal Ellis, Joanna von Gottberg, Anne Lindstrom, Stephen Peret, Teresa Rughooputh, Sanjiv Viegas, Mariana Hirve, Siddhivinayak Zambon, Maria Zhang, Wenqing Dia, Ndongo Razanazatovo, Norosoa Al‐Nabet, Ajaeb Dakhilalla M. H. Abubakar, Abdinasir Tivane, Almiro Barakat, Amal Naguib, Amel Aziz, Ammar Vicari, Andrea Moen, Ann Govindakarnavar, Arunkumar Hall, Aron Darmaa, Badarch Nathalie, Bastien Herring, Belinda Caetano, Braulia C. Whittaker, Brett Baumeister, Elsa Nakouné, Emmanuel Guthrie, Erica Inbanathan, Francis Nair, Harish Campbell, Harry Kadjo, Herve A. Oumzil, Hicham Heraud, Jean‐Michel Mott, Joshua A. Namulondo, Joyce Leite, Juliana Nahapetyan, Karen Al Ariqi, Lubna Gazo, Mahmoud Hamad Ibraheem Chadha, Mandeep Pisareva, Maria Venter, Marietjie Siqueira, Marilda M. Lumandas, Mayan Niang, Mbayame Albuaini, Mona Salman, Muhammad Oberste, Steve Srikantiah, Padmini Tang, Patrick Couto, Paula Smith, Peter Coyle, Peter Valentine Dussart, Philippe Nguyen, Phuong Nam Okada, Pilailuk Akkapaiboon Wijesinghe, Pushpa Ranjan Samuel, Reuben Brown, Richard Pebody, Richard Fasce, Rodrigo Jha, Runa Lindstrom, Stephen Gerber, Sue Potdar, Varsha Dong, Xiaomin Deng, Yi Mo |
author_facet | Williams, Thomas Jackson, Sandra Barr, Ian Bi, Shabana Bhiman, Jinal Ellis, Joanna von Gottberg, Anne Lindstrom, Stephen Peret, Teresa Rughooputh, Sanjiv Viegas, Mariana Hirve, Siddhivinayak Zambon, Maria Zhang, Wenqing Dia, Ndongo Razanazatovo, Norosoa Al‐Nabet, Ajaeb Dakhilalla M. H. Abubakar, Abdinasir Tivane, Almiro Barakat, Amal Naguib, Amel Aziz, Ammar Vicari, Andrea Moen, Ann Govindakarnavar, Arunkumar Hall, Aron Darmaa, Badarch Nathalie, Bastien Herring, Belinda Caetano, Braulia C. Whittaker, Brett Baumeister, Elsa Nakouné, Emmanuel Guthrie, Erica Inbanathan, Francis Nair, Harish Campbell, Harry Kadjo, Herve A. Oumzil, Hicham Heraud, Jean‐Michel Mott, Joshua A. Namulondo, Joyce Leite, Juliana Nahapetyan, Karen Al Ariqi, Lubna Gazo, Mahmoud Hamad Ibraheem Chadha, Mandeep Pisareva, Maria Venter, Marietjie Siqueira, Marilda M. Lumandas, Mayan Niang, Mbayame Albuaini, Mona Salman, Muhammad Oberste, Steve Srikantiah, Padmini Tang, Patrick Couto, Paula Smith, Peter Coyle, Peter Valentine Dussart, Philippe Nguyen, Phuong Nam Okada, Pilailuk Akkapaiboon Wijesinghe, Pushpa Ranjan Samuel, Reuben Brown, Richard Pebody, Richard Fasce, Rodrigo Jha, Runa Lindstrom, Stephen Gerber, Sue Potdar, Varsha Dong, Xiaomin Deng, Yi Mo |
author_sort | Williams, Thomas |
collection | PubMed |
description | BACKGROUND: External quality assessments (EQAs) for the molecular detection of human respiratory syncytial virus (RSV) are necessary to ensure the standardisation of reliable results. The Phase II, 2019–2020 World Health Organization (WHO) RSV EQA included 28 laboratories in 26 countries. The EQA panel evaluated performance in the molecular detection and subtyping of RSV‐A and RSV‐B. This manuscript describes the preparation, distribution, and analysis of the 2019–2020 WHO RSV EQA. METHODS: Panel isolates underwent whole genome sequencing and in silico primer matching. The final panel included nine contemporary, one historical virus and two negative controls. The EQA panel was manufactured and distributed by the UK National External Quality Assessment Service (UK NEQAS). National laboratories used WHO reference assays developed by the United States Centers for Disease Control and Prevention, an RSV subtyping assay developed by the Victorian Infectious Diseases Reference Laboratory (Australia), or other in‐house or commercial assays already in use at their laboratories. RESULTS: An in silico analysis of isolates showed a good match to assay primer/probes. The panel was distributed to 28 laboratories. Isolates were correctly identified in 98% of samples for detection and 99.6% for subtyping. CONCLUSIONS: The WHO RSV EQA 2019–2020 showed that laboratories performed at high standards. Updating the composition of RSV molecular EQAs with contemporary strains to ensure representation of circulating strains, and ensuring primer matching with EQA panel viruses, is advantageous in assessing diagnostic competencies of laboratories. Ongoing EQAs are recommended because of continued evolution of mismatches between current circulating strains and existing primer sets. |
format | Online Article Text |
id | pubmed-9849090 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98490902023-01-24 Results from the second WHO external quality assessment for the molecular detection of respiratory syncytial virus, 2019–2020 Williams, Thomas Jackson, Sandra Barr, Ian Bi, Shabana Bhiman, Jinal Ellis, Joanna von Gottberg, Anne Lindstrom, Stephen Peret, Teresa Rughooputh, Sanjiv Viegas, Mariana Hirve, Siddhivinayak Zambon, Maria Zhang, Wenqing Dia, Ndongo Razanazatovo, Norosoa Al‐Nabet, Ajaeb Dakhilalla M. H. Abubakar, Abdinasir Tivane, Almiro Barakat, Amal Naguib, Amel Aziz, Ammar Vicari, Andrea Moen, Ann Govindakarnavar, Arunkumar Hall, Aron Darmaa, Badarch Nathalie, Bastien Herring, Belinda Caetano, Braulia C. Whittaker, Brett Baumeister, Elsa Nakouné, Emmanuel Guthrie, Erica Inbanathan, Francis Nair, Harish Campbell, Harry Kadjo, Herve A. Oumzil, Hicham Heraud, Jean‐Michel Mott, Joshua A. Namulondo, Joyce Leite, Juliana Nahapetyan, Karen Al Ariqi, Lubna Gazo, Mahmoud Hamad Ibraheem Chadha, Mandeep Pisareva, Maria Venter, Marietjie Siqueira, Marilda M. Lumandas, Mayan Niang, Mbayame Albuaini, Mona Salman, Muhammad Oberste, Steve Srikantiah, Padmini Tang, Patrick Couto, Paula Smith, Peter Coyle, Peter Valentine Dussart, Philippe Nguyen, Phuong Nam Okada, Pilailuk Akkapaiboon Wijesinghe, Pushpa Ranjan Samuel, Reuben Brown, Richard Pebody, Richard Fasce, Rodrigo Jha, Runa Lindstrom, Stephen Gerber, Sue Potdar, Varsha Dong, Xiaomin Deng, Yi Mo Influenza Other Respir Viruses Original Articles BACKGROUND: External quality assessments (EQAs) for the molecular detection of human respiratory syncytial virus (RSV) are necessary to ensure the standardisation of reliable results. The Phase II, 2019–2020 World Health Organization (WHO) RSV EQA included 28 laboratories in 26 countries. The EQA panel evaluated performance in the molecular detection and subtyping of RSV‐A and RSV‐B. This manuscript describes the preparation, distribution, and analysis of the 2019–2020 WHO RSV EQA. METHODS: Panel isolates underwent whole genome sequencing and in silico primer matching. The final panel included nine contemporary, one historical virus and two negative controls. The EQA panel was manufactured and distributed by the UK National External Quality Assessment Service (UK NEQAS). National laboratories used WHO reference assays developed by the United States Centers for Disease Control and Prevention, an RSV subtyping assay developed by the Victorian Infectious Diseases Reference Laboratory (Australia), or other in‐house or commercial assays already in use at their laboratories. RESULTS: An in silico analysis of isolates showed a good match to assay primer/probes. The panel was distributed to 28 laboratories. Isolates were correctly identified in 98% of samples for detection and 99.6% for subtyping. CONCLUSIONS: The WHO RSV EQA 2019–2020 showed that laboratories performed at high standards. Updating the composition of RSV molecular EQAs with contemporary strains to ensure representation of circulating strains, and ensuring primer matching with EQA panel viruses, is advantageous in assessing diagnostic competencies of laboratories. Ongoing EQAs are recommended because of continued evolution of mismatches between current circulating strains and existing primer sets. John Wiley and Sons Inc. 2023-01-18 /pmc/articles/PMC9849090/ /pubmed/36824313 http://dx.doi.org/10.1111/irv.13073 Text en © 2023 The Authors. Influenza and Other Respiratory Viruses published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Williams, Thomas Jackson, Sandra Barr, Ian Bi, Shabana Bhiman, Jinal Ellis, Joanna von Gottberg, Anne Lindstrom, Stephen Peret, Teresa Rughooputh, Sanjiv Viegas, Mariana Hirve, Siddhivinayak Zambon, Maria Zhang, Wenqing Dia, Ndongo Razanazatovo, Norosoa Al‐Nabet, Ajaeb Dakhilalla M. H. Abubakar, Abdinasir Tivane, Almiro Barakat, Amal Naguib, Amel Aziz, Ammar Vicari, Andrea Moen, Ann Govindakarnavar, Arunkumar Hall, Aron Darmaa, Badarch Nathalie, Bastien Herring, Belinda Caetano, Braulia C. Whittaker, Brett Baumeister, Elsa Nakouné, Emmanuel Guthrie, Erica Inbanathan, Francis Nair, Harish Campbell, Harry Kadjo, Herve A. Oumzil, Hicham Heraud, Jean‐Michel Mott, Joshua A. Namulondo, Joyce Leite, Juliana Nahapetyan, Karen Al Ariqi, Lubna Gazo, Mahmoud Hamad Ibraheem Chadha, Mandeep Pisareva, Maria Venter, Marietjie Siqueira, Marilda M. Lumandas, Mayan Niang, Mbayame Albuaini, Mona Salman, Muhammad Oberste, Steve Srikantiah, Padmini Tang, Patrick Couto, Paula Smith, Peter Coyle, Peter Valentine Dussart, Philippe Nguyen, Phuong Nam Okada, Pilailuk Akkapaiboon Wijesinghe, Pushpa Ranjan Samuel, Reuben Brown, Richard Pebody, Richard Fasce, Rodrigo Jha, Runa Lindstrom, Stephen Gerber, Sue Potdar, Varsha Dong, Xiaomin Deng, Yi Mo Results from the second WHO external quality assessment for the molecular detection of respiratory syncytial virus, 2019–2020 |
title | Results from the second WHO external quality assessment for the molecular detection of respiratory syncytial virus, 2019–2020 |
title_full | Results from the second WHO external quality assessment for the molecular detection of respiratory syncytial virus, 2019–2020 |
title_fullStr | Results from the second WHO external quality assessment for the molecular detection of respiratory syncytial virus, 2019–2020 |
title_full_unstemmed | Results from the second WHO external quality assessment for the molecular detection of respiratory syncytial virus, 2019–2020 |
title_short | Results from the second WHO external quality assessment for the molecular detection of respiratory syncytial virus, 2019–2020 |
title_sort | results from the second who external quality assessment for the molecular detection of respiratory syncytial virus, 2019–2020 |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9849090/ https://www.ncbi.nlm.nih.gov/pubmed/36824313 http://dx.doi.org/10.1111/irv.13073 |
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