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Automation of a Rule-based Workflow to Estimate Age from Brain MR Imaging of Infants and Children Up to 2 Years Old Using Stacked Deep Learning
Purpose: Myelination-related MR signal changes in white matter are helpful for assessing normal development in infants and children. A rule-based myelination evaluation workflow regarding signal changes on T1-weighted images (T1WIs) and T2-weighted images (T2WIs) has been widely used in radiology. T...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Japanese Society for Magnetic Resonance in Medicine
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9849414/ https://www.ncbi.nlm.nih.gov/pubmed/34897147 http://dx.doi.org/10.2463/mrms.mp.2021-0068 |
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author | Wada, Akihiko Saito, Yuya Fujita, Shohei Irie, Ryusuke Akashi, Toshiaki Sano, Katsuhiro Kato, Shinpei Ikenouchi, Yutaka Hagiwara, Akifumi Sato, Kanako Tomizawa, Nobuo Hayakawa, Yayoi Kikuta, Junko Kamagata, Koji Suzuki, Michimasa Hori, Masaaki Nakanishi, Atsushi Aoki, Shigeki |
author_facet | Wada, Akihiko Saito, Yuya Fujita, Shohei Irie, Ryusuke Akashi, Toshiaki Sano, Katsuhiro Kato, Shinpei Ikenouchi, Yutaka Hagiwara, Akifumi Sato, Kanako Tomizawa, Nobuo Hayakawa, Yayoi Kikuta, Junko Kamagata, Koji Suzuki, Michimasa Hori, Masaaki Nakanishi, Atsushi Aoki, Shigeki |
author_sort | Wada, Akihiko |
collection | PubMed |
description | Purpose: Myelination-related MR signal changes in white matter are helpful for assessing normal development in infants and children. A rule-based myelination evaluation workflow regarding signal changes on T1-weighted images (T1WIs) and T2-weighted images (T2WIs) has been widely used in radiology. This study aimed to simulate a rule-based workflow using a stacked deep learning model and evaluate age estimation accuracy. Methods: The age estimation system involved two stacked neural networks: a target network-to extract five myelination-related images from the whole brain, and an age estimation network from extracted T1- and T2WIs separately. A dataset was constructed from 119 children aged below 2 years with two MRI systems. A four-fold cross-validation method was adopted. The correlation coefficient (CC), mean absolute error (MAE), and root mean squared error (RMSE) of the corrected chronological age of full-term birth, as well as the mean difference and the upper and lower limits of 95% agreement, were measured. Generalization performance was assessed using datasets acquired from different MR images. Age estimation was performed in Sturge–Weber syndrome (SWS) cases. Results: There was a strong correlation between estimated age and corrected chronological age (MAE: 0.98 months; RMSE: 1.27 months; and CC: 0.99). The mean difference and standard deviation (SD) were −0.15 and 1.26, respectively, and the upper and lower limits of 95% agreement were 2.33 and −2.63 months. Regarding generalization performance, the performance values on the external dataset were MAE of 1.85 months, RMSE of 2.59 months, and CC of 0.93. Among 13 SWS cases, 7 exceeded the limits of 95% agreement, and a proportional bias of age estimation based on myelination acceleration was exhibited below 12 months of age (P = 0.03). Conclusion: Stacked deep learning models automated the rule-based workflow in radiology and achieved highly accurate age estimation in infants and children up to 2 years of age. |
format | Online Article Text |
id | pubmed-9849414 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Japanese Society for Magnetic Resonance in Medicine |
record_format | MEDLINE/PubMed |
spelling | pubmed-98494142023-01-26 Automation of a Rule-based Workflow to Estimate Age from Brain MR Imaging of Infants and Children Up to 2 Years Old Using Stacked Deep Learning Wada, Akihiko Saito, Yuya Fujita, Shohei Irie, Ryusuke Akashi, Toshiaki Sano, Katsuhiro Kato, Shinpei Ikenouchi, Yutaka Hagiwara, Akifumi Sato, Kanako Tomizawa, Nobuo Hayakawa, Yayoi Kikuta, Junko Kamagata, Koji Suzuki, Michimasa Hori, Masaaki Nakanishi, Atsushi Aoki, Shigeki Magn Reson Med Sci Major Paper Purpose: Myelination-related MR signal changes in white matter are helpful for assessing normal development in infants and children. A rule-based myelination evaluation workflow regarding signal changes on T1-weighted images (T1WIs) and T2-weighted images (T2WIs) has been widely used in radiology. This study aimed to simulate a rule-based workflow using a stacked deep learning model and evaluate age estimation accuracy. Methods: The age estimation system involved two stacked neural networks: a target network-to extract five myelination-related images from the whole brain, and an age estimation network from extracted T1- and T2WIs separately. A dataset was constructed from 119 children aged below 2 years with two MRI systems. A four-fold cross-validation method was adopted. The correlation coefficient (CC), mean absolute error (MAE), and root mean squared error (RMSE) of the corrected chronological age of full-term birth, as well as the mean difference and the upper and lower limits of 95% agreement, were measured. Generalization performance was assessed using datasets acquired from different MR images. Age estimation was performed in Sturge–Weber syndrome (SWS) cases. Results: There was a strong correlation between estimated age and corrected chronological age (MAE: 0.98 months; RMSE: 1.27 months; and CC: 0.99). The mean difference and standard deviation (SD) were −0.15 and 1.26, respectively, and the upper and lower limits of 95% agreement were 2.33 and −2.63 months. Regarding generalization performance, the performance values on the external dataset were MAE of 1.85 months, RMSE of 2.59 months, and CC of 0.93. Among 13 SWS cases, 7 exceeded the limits of 95% agreement, and a proportional bias of age estimation based on myelination acceleration was exhibited below 12 months of age (P = 0.03). Conclusion: Stacked deep learning models automated the rule-based workflow in radiology and achieved highly accurate age estimation in infants and children up to 2 years of age. Japanese Society for Magnetic Resonance in Medicine 2021-12-10 /pmc/articles/PMC9849414/ /pubmed/34897147 http://dx.doi.org/10.2463/mrms.mp.2021-0068 Text en ©2021 Japanese Society for Magnetic Resonance in Medicine https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) |
spellingShingle | Major Paper Wada, Akihiko Saito, Yuya Fujita, Shohei Irie, Ryusuke Akashi, Toshiaki Sano, Katsuhiro Kato, Shinpei Ikenouchi, Yutaka Hagiwara, Akifumi Sato, Kanako Tomizawa, Nobuo Hayakawa, Yayoi Kikuta, Junko Kamagata, Koji Suzuki, Michimasa Hori, Masaaki Nakanishi, Atsushi Aoki, Shigeki Automation of a Rule-based Workflow to Estimate Age from Brain MR Imaging of Infants and Children Up to 2 Years Old Using Stacked Deep Learning |
title | Automation of a Rule-based Workflow to Estimate Age from Brain MR Imaging of Infants and Children Up to 2 Years Old Using Stacked Deep Learning |
title_full | Automation of a Rule-based Workflow to Estimate Age from Brain MR Imaging of Infants and Children Up to 2 Years Old Using Stacked Deep Learning |
title_fullStr | Automation of a Rule-based Workflow to Estimate Age from Brain MR Imaging of Infants and Children Up to 2 Years Old Using Stacked Deep Learning |
title_full_unstemmed | Automation of a Rule-based Workflow to Estimate Age from Brain MR Imaging of Infants and Children Up to 2 Years Old Using Stacked Deep Learning |
title_short | Automation of a Rule-based Workflow to Estimate Age from Brain MR Imaging of Infants and Children Up to 2 Years Old Using Stacked Deep Learning |
title_sort | automation of a rule-based workflow to estimate age from brain mr imaging of infants and children up to 2 years old using stacked deep learning |
topic | Major Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9849414/ https://www.ncbi.nlm.nih.gov/pubmed/34897147 http://dx.doi.org/10.2463/mrms.mp.2021-0068 |
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