Cargando…
How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS”
This paper provides supplementary data to the research paper ''Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS" [1]. Here, environmental samples from a marine recirculating aquaculture system (RAS) were subjected to microbiome studies. This...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9849859/ https://www.ncbi.nlm.nih.gov/pubmed/36687152 http://dx.doi.org/10.1016/j.dib.2022.108846 |
_version_ | 1784872047290089472 |
---|---|
author | Drønen, K. Roalkvam, I. Tungland, K. Dahle, H. Nilsen, H. Olsen, A.B. Wergeland, H. |
author_facet | Drønen, K. Roalkvam, I. Tungland, K. Dahle, H. Nilsen, H. Olsen, A.B. Wergeland, H. |
author_sort | Drønen, K. |
collection | PubMed |
description | This paper provides supplementary data to the research paper ''Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS" [1]. Here, environmental samples from a marine recirculating aquaculture system (RAS) were subjected to microbiome studies. This data article adds value to the research article by providing open access to data files that increased information retrieval from the 16S rRNA sequence library. A fasta file of full-length 16S rRNA sequences from fish pathogenic microbes was deposited in the Mendeley data repository, a collection named “Fish Pathogen Database”. Alignment of this database against the short sequences in the 16S rRNA library revealed the fish pathogen-relatives. Furthermore, a link to a CSV file containing Pearson correlation data was provided, an analysis based on the relative abundance information of all operational taxonomic units defined in the microbiome dataset. Included also, the methodological description of the Pearson correlation analysis, as well as a table where correlation data for the defined fish pathogen-relatives was retrieved from the large data file (Table 1). |
format | Online Article Text |
id | pubmed-9849859 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-98498592023-01-20 How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS” Drønen, K. Roalkvam, I. Tungland, K. Dahle, H. Nilsen, H. Olsen, A.B. Wergeland, H. Data Brief Data Article This paper provides supplementary data to the research paper ''Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS" [1]. Here, environmental samples from a marine recirculating aquaculture system (RAS) were subjected to microbiome studies. This data article adds value to the research article by providing open access to data files that increased information retrieval from the 16S rRNA sequence library. A fasta file of full-length 16S rRNA sequences from fish pathogenic microbes was deposited in the Mendeley data repository, a collection named “Fish Pathogen Database”. Alignment of this database against the short sequences in the 16S rRNA library revealed the fish pathogen-relatives. Furthermore, a link to a CSV file containing Pearson correlation data was provided, an analysis based on the relative abundance information of all operational taxonomic units defined in the microbiome dataset. Included also, the methodological description of the Pearson correlation analysis, as well as a table where correlation data for the defined fish pathogen-relatives was retrieved from the large data file (Table 1). Elsevier 2022-12-31 /pmc/articles/PMC9849859/ /pubmed/36687152 http://dx.doi.org/10.1016/j.dib.2022.108846 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Drønen, K. Roalkvam, I. Tungland, K. Dahle, H. Nilsen, H. Olsen, A.B. Wergeland, H. How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS” |
title | How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS” |
title_full | How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS” |
title_fullStr | How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS” |
title_full_unstemmed | How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS” |
title_short | How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS” |
title_sort | how to define fish pathogen relatives from a 16s rrna sequence library and pearson correlation analysis between defined otus from the library: supplementary data to the research article “presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt ras” |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9849859/ https://www.ncbi.nlm.nih.gov/pubmed/36687152 http://dx.doi.org/10.1016/j.dib.2022.108846 |
work_keys_str_mv | AT drønenk howtodefinefishpathogenrelativesfroma16srrnasequencelibraryandpearsoncorrelationanalysisbetweendefinedotusfromthelibrarysupplementarydatatotheresearcharticlepresenceandhabitatsofbacterialfishpathogenrelativesinamarinesalmonpostsmoltras AT roalkvami howtodefinefishpathogenrelativesfroma16srrnasequencelibraryandpearsoncorrelationanalysisbetweendefinedotusfromthelibrarysupplementarydatatotheresearcharticlepresenceandhabitatsofbacterialfishpathogenrelativesinamarinesalmonpostsmoltras AT tunglandk howtodefinefishpathogenrelativesfroma16srrnasequencelibraryandpearsoncorrelationanalysisbetweendefinedotusfromthelibrarysupplementarydatatotheresearcharticlepresenceandhabitatsofbacterialfishpathogenrelativesinamarinesalmonpostsmoltras AT dahleh howtodefinefishpathogenrelativesfroma16srrnasequencelibraryandpearsoncorrelationanalysisbetweendefinedotusfromthelibrarysupplementarydatatotheresearcharticlepresenceandhabitatsofbacterialfishpathogenrelativesinamarinesalmonpostsmoltras AT nilsenh howtodefinefishpathogenrelativesfroma16srrnasequencelibraryandpearsoncorrelationanalysisbetweendefinedotusfromthelibrarysupplementarydatatotheresearcharticlepresenceandhabitatsofbacterialfishpathogenrelativesinamarinesalmonpostsmoltras AT olsenab howtodefinefishpathogenrelativesfroma16srrnasequencelibraryandpearsoncorrelationanalysisbetweendefinedotusfromthelibrarysupplementarydatatotheresearcharticlepresenceandhabitatsofbacterialfishpathogenrelativesinamarinesalmonpostsmoltras AT wergelandh howtodefinefishpathogenrelativesfroma16srrnasequencelibraryandpearsoncorrelationanalysisbetweendefinedotusfromthelibrarysupplementarydatatotheresearcharticlepresenceandhabitatsofbacterialfishpathogenrelativesinamarinesalmonpostsmoltras |