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How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS”

This paper provides supplementary data to the research paper ''Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS" [1]. Here, environmental samples from a marine recirculating aquaculture system (RAS) were subjected to microbiome studies. This...

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Detalles Bibliográficos
Autores principales: Drønen, K., Roalkvam, I., Tungland, K., Dahle, H., Nilsen, H., Olsen, A.B., Wergeland, H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9849859/
https://www.ncbi.nlm.nih.gov/pubmed/36687152
http://dx.doi.org/10.1016/j.dib.2022.108846
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author Drønen, K.
Roalkvam, I.
Tungland, K.
Dahle, H.
Nilsen, H.
Olsen, A.B.
Wergeland, H.
author_facet Drønen, K.
Roalkvam, I.
Tungland, K.
Dahle, H.
Nilsen, H.
Olsen, A.B.
Wergeland, H.
author_sort Drønen, K.
collection PubMed
description This paper provides supplementary data to the research paper ''Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS" [1]. Here, environmental samples from a marine recirculating aquaculture system (RAS) were subjected to microbiome studies. This data article adds value to the research article by providing open access to data files that increased information retrieval from the 16S rRNA sequence library. A fasta file of full-length 16S rRNA sequences from fish pathogenic microbes was deposited in the Mendeley data repository, a collection named “Fish Pathogen Database”. Alignment of this database against the short sequences in the 16S rRNA library revealed the fish pathogen-relatives. Furthermore, a link to a CSV file containing Pearson correlation data was provided, an analysis based on the relative abundance information of all operational taxonomic units defined in the microbiome dataset. Included also, the methodological description of the Pearson correlation analysis, as well as a table where correlation data for the defined fish pathogen-relatives was retrieved from the large data file (Table 1).
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spelling pubmed-98498592023-01-20 How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS” Drønen, K. Roalkvam, I. Tungland, K. Dahle, H. Nilsen, H. Olsen, A.B. Wergeland, H. Data Brief Data Article This paper provides supplementary data to the research paper ''Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS" [1]. Here, environmental samples from a marine recirculating aquaculture system (RAS) were subjected to microbiome studies. This data article adds value to the research article by providing open access to data files that increased information retrieval from the 16S rRNA sequence library. A fasta file of full-length 16S rRNA sequences from fish pathogenic microbes was deposited in the Mendeley data repository, a collection named “Fish Pathogen Database”. Alignment of this database against the short sequences in the 16S rRNA library revealed the fish pathogen-relatives. Furthermore, a link to a CSV file containing Pearson correlation data was provided, an analysis based on the relative abundance information of all operational taxonomic units defined in the microbiome dataset. Included also, the methodological description of the Pearson correlation analysis, as well as a table where correlation data for the defined fish pathogen-relatives was retrieved from the large data file (Table 1). Elsevier 2022-12-31 /pmc/articles/PMC9849859/ /pubmed/36687152 http://dx.doi.org/10.1016/j.dib.2022.108846 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Drønen, K.
Roalkvam, I.
Tungland, K.
Dahle, H.
Nilsen, H.
Olsen, A.B.
Wergeland, H.
How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS”
title How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS”
title_full How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS”
title_fullStr How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS”
title_full_unstemmed How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS”
title_short How to define fish pathogen relatives from a 16S rRNA sequence library and Pearson correlation analysis between defined OTUs from the library: Supplementary data to the research article “Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS”
title_sort how to define fish pathogen relatives from a 16s rrna sequence library and pearson correlation analysis between defined otus from the library: supplementary data to the research article “presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt ras”
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9849859/
https://www.ncbi.nlm.nih.gov/pubmed/36687152
http://dx.doi.org/10.1016/j.dib.2022.108846
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