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Density functional theory and molecular docking study to lutein molecule for COVID-19 protease inhibitors

Since the beginning of the corona pandemic, numerous scientific projects have been conducted worldwide to investigate how the new virus can be combated. Researchers are developing various vaccines and drugs at full speed – with varying degrees of success. In this work, silico screening (molecular do...

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Detalles Bibliográficos
Autores principales: Kafi, Dhaidan Khalaf, Ayyash, Adil N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9850325/
https://www.ncbi.nlm.nih.gov/pubmed/36691520
http://dx.doi.org/10.1007/s13204-022-02735-9
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author Kafi, Dhaidan Khalaf
Ayyash, Adil N.
author_facet Kafi, Dhaidan Khalaf
Ayyash, Adil N.
author_sort Kafi, Dhaidan Khalaf
collection PubMed
description Since the beginning of the corona pandemic, numerous scientific projects have been conducted worldwide to investigate how the new virus can be combated. Researchers are developing various vaccines and drugs at full speed – with varying degrees of success. In this work, silico screening (molecular docking analysis) is performed on twenty natural compounds, which are expected to provide valuable lead molecules and medication to treat a new condition SARS-CoV-2. Our results indicate that out of the 20 compounds on the candidate list, lutein and Polydatin, natural components of fruits and vegetables (especially egg yolk and maize) have shown an excellent performance in our docking studies through a minimum binding energy of − 9.8 kcal/mol also − 7.4 kcal/mol, separately. This indicates their potential for the inhibitory molecular interactions against COVID-19. The main intent of the research is to analyse the protein components and investigate the molecules.
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spelling pubmed-98503252023-01-19 Density functional theory and molecular docking study to lutein molecule for COVID-19 protease inhibitors Kafi, Dhaidan Khalaf Ayyash, Adil N. Appl Nanosci Original Article Since the beginning of the corona pandemic, numerous scientific projects have been conducted worldwide to investigate how the new virus can be combated. Researchers are developing various vaccines and drugs at full speed – with varying degrees of success. In this work, silico screening (molecular docking analysis) is performed on twenty natural compounds, which are expected to provide valuable lead molecules and medication to treat a new condition SARS-CoV-2. Our results indicate that out of the 20 compounds on the candidate list, lutein and Polydatin, natural components of fruits and vegetables (especially egg yolk and maize) have shown an excellent performance in our docking studies through a minimum binding energy of − 9.8 kcal/mol also − 7.4 kcal/mol, separately. This indicates their potential for the inhibitory molecular interactions against COVID-19. The main intent of the research is to analyse the protein components and investigate the molecules. Springer International Publishing 2023-01-19 /pmc/articles/PMC9850325/ /pubmed/36691520 http://dx.doi.org/10.1007/s13204-022-02735-9 Text en © King Abdulaziz City for Science and Technology 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Kafi, Dhaidan Khalaf
Ayyash, Adil N.
Density functional theory and molecular docking study to lutein molecule for COVID-19 protease inhibitors
title Density functional theory and molecular docking study to lutein molecule for COVID-19 protease inhibitors
title_full Density functional theory and molecular docking study to lutein molecule for COVID-19 protease inhibitors
title_fullStr Density functional theory and molecular docking study to lutein molecule for COVID-19 protease inhibitors
title_full_unstemmed Density functional theory and molecular docking study to lutein molecule for COVID-19 protease inhibitors
title_short Density functional theory and molecular docking study to lutein molecule for COVID-19 protease inhibitors
title_sort density functional theory and molecular docking study to lutein molecule for covid-19 protease inhibitors
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9850325/
https://www.ncbi.nlm.nih.gov/pubmed/36691520
http://dx.doi.org/10.1007/s13204-022-02735-9
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