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Full genome sequence for the African swine fever virus outbreak in the Dominican Republic in 1980

African swine fever is a lethal disease of domestic pigs, geographically expanding as a pandemic, that is affecting countries across Eurasia and severely damaging their swine production industry. After more than 40 years of being absent in the Western hemisphere, in 2020 ASF reappeared in the Domini...

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Autores principales: Spinard, Edward, O’Donnell, Vivian, Vuono, Elizabeth, Rai, Ayushi, Davis, Charronne, Ramirez-Medina, Elizabeth, Espinoza, Nallely, Valladares, Alyssa, Borca, Manuel V., Gladue, Douglas P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9852453/
https://www.ncbi.nlm.nih.gov/pubmed/36658154
http://dx.doi.org/10.1038/s41598-022-25987-5
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author Spinard, Edward
O’Donnell, Vivian
Vuono, Elizabeth
Rai, Ayushi
Davis, Charronne
Ramirez-Medina, Elizabeth
Espinoza, Nallely
Valladares, Alyssa
Borca, Manuel V.
Gladue, Douglas P.
author_facet Spinard, Edward
O’Donnell, Vivian
Vuono, Elizabeth
Rai, Ayushi
Davis, Charronne
Ramirez-Medina, Elizabeth
Espinoza, Nallely
Valladares, Alyssa
Borca, Manuel V.
Gladue, Douglas P.
author_sort Spinard, Edward
collection PubMed
description African swine fever is a lethal disease of domestic pigs, geographically expanding as a pandemic, that is affecting countries across Eurasia and severely damaging their swine production industry. After more than 40 years of being absent in the Western hemisphere, in 2020 ASF reappeared in the Dominican Republic and Haiti. The recent outbreak strain in the Dominican Republic has been identified as a genotype II ASFV a derivative of the ASF strain circulating in Asia and Europe. However, to date no full-length genome sequence from either the 1978–1980 Here we report the complete genome sequence of an African swine fever virus (ASFV) (DR-1980) that was previously isolated from blood collected in 1980 from the Dominican Republic at the end of the last outbreak, before culling of all swine on the island of Hispaniola and stored in the Plum Island Animal Disease Center ASFV repository. A contig representing the full-length genome (183,687 base pairs) was de novo assembled into a single contig using both Nanopore and Illumina sequences. DR-1980 was determined to belong to genotype I and, as determined by full genome comparison, a close relative to the sequenced Sardinia viruses that were causing outbreaks at this time.
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spelling pubmed-98524532023-01-21 Full genome sequence for the African swine fever virus outbreak in the Dominican Republic in 1980 Spinard, Edward O’Donnell, Vivian Vuono, Elizabeth Rai, Ayushi Davis, Charronne Ramirez-Medina, Elizabeth Espinoza, Nallely Valladares, Alyssa Borca, Manuel V. Gladue, Douglas P. Sci Rep Article African swine fever is a lethal disease of domestic pigs, geographically expanding as a pandemic, that is affecting countries across Eurasia and severely damaging their swine production industry. After more than 40 years of being absent in the Western hemisphere, in 2020 ASF reappeared in the Dominican Republic and Haiti. The recent outbreak strain in the Dominican Republic has been identified as a genotype II ASFV a derivative of the ASF strain circulating in Asia and Europe. However, to date no full-length genome sequence from either the 1978–1980 Here we report the complete genome sequence of an African swine fever virus (ASFV) (DR-1980) that was previously isolated from blood collected in 1980 from the Dominican Republic at the end of the last outbreak, before culling of all swine on the island of Hispaniola and stored in the Plum Island Animal Disease Center ASFV repository. A contig representing the full-length genome (183,687 base pairs) was de novo assembled into a single contig using both Nanopore and Illumina sequences. DR-1980 was determined to belong to genotype I and, as determined by full genome comparison, a close relative to the sequenced Sardinia viruses that were causing outbreaks at this time. Nature Publishing Group UK 2023-01-19 /pmc/articles/PMC9852453/ /pubmed/36658154 http://dx.doi.org/10.1038/s41598-022-25987-5 Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Spinard, Edward
O’Donnell, Vivian
Vuono, Elizabeth
Rai, Ayushi
Davis, Charronne
Ramirez-Medina, Elizabeth
Espinoza, Nallely
Valladares, Alyssa
Borca, Manuel V.
Gladue, Douglas P.
Full genome sequence for the African swine fever virus outbreak in the Dominican Republic in 1980
title Full genome sequence for the African swine fever virus outbreak in the Dominican Republic in 1980
title_full Full genome sequence for the African swine fever virus outbreak in the Dominican Republic in 1980
title_fullStr Full genome sequence for the African swine fever virus outbreak in the Dominican Republic in 1980
title_full_unstemmed Full genome sequence for the African swine fever virus outbreak in the Dominican Republic in 1980
title_short Full genome sequence for the African swine fever virus outbreak in the Dominican Republic in 1980
title_sort full genome sequence for the african swine fever virus outbreak in the dominican republic in 1980
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9852453/
https://www.ncbi.nlm.nih.gov/pubmed/36658154
http://dx.doi.org/10.1038/s41598-022-25987-5
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