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Bayesian modelling of phosphorus content in wheat grain using hyperspectral reflectance data

BACKGROUND: As a result of the technological progress, the use of sensors for crop survey has substantially increased, generating valuable information for modelling agricultural data. Plant spectroscopy jointly with statistical modeling can potentially help to assess certain chemical components of i...

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Autores principales: Pacheco-Gil, Rosa Angela, Velasco-Cruz, Ciro, Pérez-Rodríguez, Paulino, Burgueño, Juan, Pérez-Elizalde, Sergio, Rodrigues, Francelino, Ortiz-Monasterio, Ivan, del Valle-Paniagua, David Hebert, Toledo, Fernando
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9854047/
https://www.ncbi.nlm.nih.gov/pubmed/36670477
http://dx.doi.org/10.1186/s13007-023-00980-9
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author Pacheco-Gil, Rosa Angela
Velasco-Cruz, Ciro
Pérez-Rodríguez, Paulino
Burgueño, Juan
Pérez-Elizalde, Sergio
Rodrigues, Francelino
Ortiz-Monasterio, Ivan
del Valle-Paniagua, David Hebert
Toledo, Fernando
author_facet Pacheco-Gil, Rosa Angela
Velasco-Cruz, Ciro
Pérez-Rodríguez, Paulino
Burgueño, Juan
Pérez-Elizalde, Sergio
Rodrigues, Francelino
Ortiz-Monasterio, Ivan
del Valle-Paniagua, David Hebert
Toledo, Fernando
author_sort Pacheco-Gil, Rosa Angela
collection PubMed
description BACKGROUND: As a result of the technological progress, the use of sensors for crop survey has substantially increased, generating valuable information for modelling agricultural data. Plant spectroscopy jointly with statistical modeling can potentially help to assess certain chemical components of interest present in plants, which may be laborious and expensive to obtain by direct measurements. In this research, the phosphorus content in wheat grain is modeled using reflectance information measured by a hyperspectral sensor at different wavelengths. A Bayesian procedure for selecting variables was used to identify the set of the most important spectral bands. Additionally, three different models were evaluated: the first model assumes that the observations are independent, the other two models assume that the observations are spatially correlated: one of the proposed models, assumes spatial dependence using a Conditionally Autoregressive Model (CAR), and the other through an exponential correlogram. The goodness of fit of the models was evaluated by means of the Deviance Information Criterion, and the predictive power is evaluated using cross validation. RESULTS: We have found that CAR was the model that best fits and predicts the data. Additionally, the selection variable procedure in the CAR model reveals which wavelengths in the range of 500–690 nm are the most important. Comparing the vegetative indices with the CAR model, it was observed that the average correlation of the CAR model exceeded that of the vegetative indices by 23.26%, − 1.2% and 22.78% for the year 2010, 2011 and 2012 respectively; therefore, the use of the proposed methodology outperformed the vegetative indices in prediction. CONCLUSIONS: The proposal to predict the phosphorus content in wheat grain using Bayesian approach, reflect with the results as a good alternative. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13007-023-00980-9.
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spelling pubmed-98540472023-01-21 Bayesian modelling of phosphorus content in wheat grain using hyperspectral reflectance data Pacheco-Gil, Rosa Angela Velasco-Cruz, Ciro Pérez-Rodríguez, Paulino Burgueño, Juan Pérez-Elizalde, Sergio Rodrigues, Francelino Ortiz-Monasterio, Ivan del Valle-Paniagua, David Hebert Toledo, Fernando Plant Methods Research BACKGROUND: As a result of the technological progress, the use of sensors for crop survey has substantially increased, generating valuable information for modelling agricultural data. Plant spectroscopy jointly with statistical modeling can potentially help to assess certain chemical components of interest present in plants, which may be laborious and expensive to obtain by direct measurements. In this research, the phosphorus content in wheat grain is modeled using reflectance information measured by a hyperspectral sensor at different wavelengths. A Bayesian procedure for selecting variables was used to identify the set of the most important spectral bands. Additionally, three different models were evaluated: the first model assumes that the observations are independent, the other two models assume that the observations are spatially correlated: one of the proposed models, assumes spatial dependence using a Conditionally Autoregressive Model (CAR), and the other through an exponential correlogram. The goodness of fit of the models was evaluated by means of the Deviance Information Criterion, and the predictive power is evaluated using cross validation. RESULTS: We have found that CAR was the model that best fits and predicts the data. Additionally, the selection variable procedure in the CAR model reveals which wavelengths in the range of 500–690 nm are the most important. Comparing the vegetative indices with the CAR model, it was observed that the average correlation of the CAR model exceeded that of the vegetative indices by 23.26%, − 1.2% and 22.78% for the year 2010, 2011 and 2012 respectively; therefore, the use of the proposed methodology outperformed the vegetative indices in prediction. CONCLUSIONS: The proposal to predict the phosphorus content in wheat grain using Bayesian approach, reflect with the results as a good alternative. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13007-023-00980-9. BioMed Central 2023-01-20 /pmc/articles/PMC9854047/ /pubmed/36670477 http://dx.doi.org/10.1186/s13007-023-00980-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Pacheco-Gil, Rosa Angela
Velasco-Cruz, Ciro
Pérez-Rodríguez, Paulino
Burgueño, Juan
Pérez-Elizalde, Sergio
Rodrigues, Francelino
Ortiz-Monasterio, Ivan
del Valle-Paniagua, David Hebert
Toledo, Fernando
Bayesian modelling of phosphorus content in wheat grain using hyperspectral reflectance data
title Bayesian modelling of phosphorus content in wheat grain using hyperspectral reflectance data
title_full Bayesian modelling of phosphorus content in wheat grain using hyperspectral reflectance data
title_fullStr Bayesian modelling of phosphorus content in wheat grain using hyperspectral reflectance data
title_full_unstemmed Bayesian modelling of phosphorus content in wheat grain using hyperspectral reflectance data
title_short Bayesian modelling of phosphorus content in wheat grain using hyperspectral reflectance data
title_sort bayesian modelling of phosphorus content in wheat grain using hyperspectral reflectance data
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9854047/
https://www.ncbi.nlm.nih.gov/pubmed/36670477
http://dx.doi.org/10.1186/s13007-023-00980-9
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