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Identification of immune associated potential molecular targets in proliferative diabetic retinopathy
BACKGROUND: Diabetic retinopathy (DR) is one of the most common microvascular complications of diabetes and causes of blindness in developed countries. Our study was designed to identify immune-related genes involved in the progression of proliferative diabetic retinopathy (PDR). METHODS: The “GSE10...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9854219/ https://www.ncbi.nlm.nih.gov/pubmed/36658547 http://dx.doi.org/10.1186/s12886-023-02774-y |
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author | Gao, Ying Xue, Min Dai, Bing Tang, Yun Liu, Jingyu Zhao, Changlin Meng, Hu Yan, Feng Zhu, Xiaomin Lu, Yan Ge, Yirui |
author_facet | Gao, Ying Xue, Min Dai, Bing Tang, Yun Liu, Jingyu Zhao, Changlin Meng, Hu Yan, Feng Zhu, Xiaomin Lu, Yan Ge, Yirui |
author_sort | Gao, Ying |
collection | PubMed |
description | BACKGROUND: Diabetic retinopathy (DR) is one of the most common microvascular complications of diabetes and causes of blindness in developed countries. Our study was designed to identify immune-related genes involved in the progression of proliferative diabetic retinopathy (PDR). METHODS: The “GSE102485” dataset of neovascular membrane samples (NVMs) from type 1 and 2 diabetes mellitus patients was downloaded from the Gene Expression Omnibus database. Functional enrichment analyses, protein–protein interaction network (PPI) construction, and module analysis of immune pathways in NVMs and controls were conducted via Gene Set Enrichment Analysis and Metascape. RESULTS: The significantly upregulated hallmark gene sets in DR2 and DR1 groups were involved in five immune pathways. Only CCR4, CXCR6, C3AR1, LPAR1, C5AR1, and P2RY14 were not previously reported in the context of PDR molecular pathophysiology. Except for P2RY14, all of the above were upregulated in retinal samples from experimental diabetes mouse models and human retina microvascular endothelial cells (HRMECs) treated with high glucose (HG) by quantitative Real Time Polymerase Chain Reaction (qRT-PCR). CONCLUSION: The genes identified herein provide insight into immune-related differential gene expression during DR progression. |
format | Online Article Text |
id | pubmed-9854219 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-98542192023-01-21 Identification of immune associated potential molecular targets in proliferative diabetic retinopathy Gao, Ying Xue, Min Dai, Bing Tang, Yun Liu, Jingyu Zhao, Changlin Meng, Hu Yan, Feng Zhu, Xiaomin Lu, Yan Ge, Yirui BMC Ophthalmol Research BACKGROUND: Diabetic retinopathy (DR) is one of the most common microvascular complications of diabetes and causes of blindness in developed countries. Our study was designed to identify immune-related genes involved in the progression of proliferative diabetic retinopathy (PDR). METHODS: The “GSE102485” dataset of neovascular membrane samples (NVMs) from type 1 and 2 diabetes mellitus patients was downloaded from the Gene Expression Omnibus database. Functional enrichment analyses, protein–protein interaction network (PPI) construction, and module analysis of immune pathways in NVMs and controls were conducted via Gene Set Enrichment Analysis and Metascape. RESULTS: The significantly upregulated hallmark gene sets in DR2 and DR1 groups were involved in five immune pathways. Only CCR4, CXCR6, C3AR1, LPAR1, C5AR1, and P2RY14 were not previously reported in the context of PDR molecular pathophysiology. Except for P2RY14, all of the above were upregulated in retinal samples from experimental diabetes mouse models and human retina microvascular endothelial cells (HRMECs) treated with high glucose (HG) by quantitative Real Time Polymerase Chain Reaction (qRT-PCR). CONCLUSION: The genes identified herein provide insight into immune-related differential gene expression during DR progression. BioMed Central 2023-01-19 /pmc/articles/PMC9854219/ /pubmed/36658547 http://dx.doi.org/10.1186/s12886-023-02774-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Gao, Ying Xue, Min Dai, Bing Tang, Yun Liu, Jingyu Zhao, Changlin Meng, Hu Yan, Feng Zhu, Xiaomin Lu, Yan Ge, Yirui Identification of immune associated potential molecular targets in proliferative diabetic retinopathy |
title | Identification of immune associated potential molecular targets in proliferative diabetic retinopathy |
title_full | Identification of immune associated potential molecular targets in proliferative diabetic retinopathy |
title_fullStr | Identification of immune associated potential molecular targets in proliferative diabetic retinopathy |
title_full_unstemmed | Identification of immune associated potential molecular targets in proliferative diabetic retinopathy |
title_short | Identification of immune associated potential molecular targets in proliferative diabetic retinopathy |
title_sort | identification of immune associated potential molecular targets in proliferative diabetic retinopathy |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9854219/ https://www.ncbi.nlm.nih.gov/pubmed/36658547 http://dx.doi.org/10.1186/s12886-023-02774-y |
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