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Natural Language Processing Applications for Computer-Aided Diagnosis in Oncology

In the era of big data, text-based medical data, such as electronic health records (EHR) and electronic medical records (EMR), are growing rapidly. EHR and EMR are collected from patients to record their basic information, lab tests, vital signs, clinical notes, and reports. EHR and EMR contain the...

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Autores principales: Li, Chengtai, Zhang, Yiming, Weng, Ying, Wang, Boding, Li, Zhenzhu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9857980/
https://www.ncbi.nlm.nih.gov/pubmed/36673096
http://dx.doi.org/10.3390/diagnostics13020286
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author Li, Chengtai
Zhang, Yiming
Weng, Ying
Wang, Boding
Li, Zhenzhu
author_facet Li, Chengtai
Zhang, Yiming
Weng, Ying
Wang, Boding
Li, Zhenzhu
author_sort Li, Chengtai
collection PubMed
description In the era of big data, text-based medical data, such as electronic health records (EHR) and electronic medical records (EMR), are growing rapidly. EHR and EMR are collected from patients to record their basic information, lab tests, vital signs, clinical notes, and reports. EHR and EMR contain the helpful information to assist oncologists in computer-aided diagnosis and decision making. However, it is time consuming for doctors to extract the valuable information they need and analyze the information from the EHR and EMR data. Recently, more and more research works have applied natural language processing (NLP) techniques, i.e., rule-based, machine learning-based, and deep learning-based techniques, on the EHR and EMR data for computer-aided diagnosis in oncology. The objective of this review is to narratively review the recent progress in the area of NLP applications for computer-aided diagnosis in oncology. Moreover, we intend to reduce the research gap between artificial intelligence (AI) experts and clinical specialists to design better NLP applications. We originally identified 295 articles from the three electronic databases: PubMed, Google Scholar, and ACL Anthology; then, we removed the duplicated papers and manually screened the irrelevant papers based on the content of the abstract; finally, we included a total of 23 articles after the screening process of the literature review. Furthermore, we provided an in-depth analysis and categorized these studies into seven cancer types: breast cancer, lung cancer, liver cancer, prostate cancer, pancreatic cancer, colorectal cancer, and brain tumors. Additionally, we identified the current limitations of NLP applications on supporting the clinical practices and we suggest some promising future research directions in this paper.
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spelling pubmed-98579802023-01-21 Natural Language Processing Applications for Computer-Aided Diagnosis in Oncology Li, Chengtai Zhang, Yiming Weng, Ying Wang, Boding Li, Zhenzhu Diagnostics (Basel) Review In the era of big data, text-based medical data, such as electronic health records (EHR) and electronic medical records (EMR), are growing rapidly. EHR and EMR are collected from patients to record their basic information, lab tests, vital signs, clinical notes, and reports. EHR and EMR contain the helpful information to assist oncologists in computer-aided diagnosis and decision making. However, it is time consuming for doctors to extract the valuable information they need and analyze the information from the EHR and EMR data. Recently, more and more research works have applied natural language processing (NLP) techniques, i.e., rule-based, machine learning-based, and deep learning-based techniques, on the EHR and EMR data for computer-aided diagnosis in oncology. The objective of this review is to narratively review the recent progress in the area of NLP applications for computer-aided diagnosis in oncology. Moreover, we intend to reduce the research gap between artificial intelligence (AI) experts and clinical specialists to design better NLP applications. We originally identified 295 articles from the three electronic databases: PubMed, Google Scholar, and ACL Anthology; then, we removed the duplicated papers and manually screened the irrelevant papers based on the content of the abstract; finally, we included a total of 23 articles after the screening process of the literature review. Furthermore, we provided an in-depth analysis and categorized these studies into seven cancer types: breast cancer, lung cancer, liver cancer, prostate cancer, pancreatic cancer, colorectal cancer, and brain tumors. Additionally, we identified the current limitations of NLP applications on supporting the clinical practices and we suggest some promising future research directions in this paper. MDPI 2023-01-12 /pmc/articles/PMC9857980/ /pubmed/36673096 http://dx.doi.org/10.3390/diagnostics13020286 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Li, Chengtai
Zhang, Yiming
Weng, Ying
Wang, Boding
Li, Zhenzhu
Natural Language Processing Applications for Computer-Aided Diagnosis in Oncology
title Natural Language Processing Applications for Computer-Aided Diagnosis in Oncology
title_full Natural Language Processing Applications for Computer-Aided Diagnosis in Oncology
title_fullStr Natural Language Processing Applications for Computer-Aided Diagnosis in Oncology
title_full_unstemmed Natural Language Processing Applications for Computer-Aided Diagnosis in Oncology
title_short Natural Language Processing Applications for Computer-Aided Diagnosis in Oncology
title_sort natural language processing applications for computer-aided diagnosis in oncology
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9857980/
https://www.ncbi.nlm.nih.gov/pubmed/36673096
http://dx.doi.org/10.3390/diagnostics13020286
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