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Modeling the Evolution of Biological Neural Networks Based on Caenorhabditis elegans Connectomes across Development

Knowledge of the structural properties of biological neural networks can help in understanding how particular responses and actions are generated. Recently, Witvliet et al. published the connectomes of eight isogenic Caenorhabditis elegans hermaphrodites at different postembryonic ages, from birth t...

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Detalles Bibliográficos
Autores principales: Zhao, Hongfei, Shi, Zhiguo, Gong, Zhefeng, He, Shibo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9857992/
https://www.ncbi.nlm.nih.gov/pubmed/36673192
http://dx.doi.org/10.3390/e25010051
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author Zhao, Hongfei
Shi, Zhiguo
Gong, Zhefeng
He, Shibo
author_facet Zhao, Hongfei
Shi, Zhiguo
Gong, Zhefeng
He, Shibo
author_sort Zhao, Hongfei
collection PubMed
description Knowledge of the structural properties of biological neural networks can help in understanding how particular responses and actions are generated. Recently, Witvliet et al. published the connectomes of eight isogenic Caenorhabditis elegans hermaphrodites at different postembryonic ages, from birth to adulthood. We analyzed the basic structural properties of these biological neural networks. From birth to adulthood, the asymmetry between in-degrees and out-degrees over the C. elegans neuronal network increased with age, in addition to an increase in the number of nodes and edges. The degree distributions were neither Poisson distributions nor pure power-law distributions. We have proposed a model of network evolution with different initial attractiveness for in-degrees and out-degrees of nodes and preferential attachment, which reproduces the asymmetry between in-degrees and out-degrees and similar degree distributions via the tuning of the initial attractiveness values. In this study, we present the well-preserved structural properties of C. elegans neuronal networks across development, and provide some insight into understanding the evolutionary processes of biological neural networks through a simple network model.
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spelling pubmed-98579922023-01-21 Modeling the Evolution of Biological Neural Networks Based on Caenorhabditis elegans Connectomes across Development Zhao, Hongfei Shi, Zhiguo Gong, Zhefeng He, Shibo Entropy (Basel) Article Knowledge of the structural properties of biological neural networks can help in understanding how particular responses and actions are generated. Recently, Witvliet et al. published the connectomes of eight isogenic Caenorhabditis elegans hermaphrodites at different postembryonic ages, from birth to adulthood. We analyzed the basic structural properties of these biological neural networks. From birth to adulthood, the asymmetry between in-degrees and out-degrees over the C. elegans neuronal network increased with age, in addition to an increase in the number of nodes and edges. The degree distributions were neither Poisson distributions nor pure power-law distributions. We have proposed a model of network evolution with different initial attractiveness for in-degrees and out-degrees of nodes and preferential attachment, which reproduces the asymmetry between in-degrees and out-degrees and similar degree distributions via the tuning of the initial attractiveness values. In this study, we present the well-preserved structural properties of C. elegans neuronal networks across development, and provide some insight into understanding the evolutionary processes of biological neural networks through a simple network model. MDPI 2022-12-27 /pmc/articles/PMC9857992/ /pubmed/36673192 http://dx.doi.org/10.3390/e25010051 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhao, Hongfei
Shi, Zhiguo
Gong, Zhefeng
He, Shibo
Modeling the Evolution of Biological Neural Networks Based on Caenorhabditis elegans Connectomes across Development
title Modeling the Evolution of Biological Neural Networks Based on Caenorhabditis elegans Connectomes across Development
title_full Modeling the Evolution of Biological Neural Networks Based on Caenorhabditis elegans Connectomes across Development
title_fullStr Modeling the Evolution of Biological Neural Networks Based on Caenorhabditis elegans Connectomes across Development
title_full_unstemmed Modeling the Evolution of Biological Neural Networks Based on Caenorhabditis elegans Connectomes across Development
title_short Modeling the Evolution of Biological Neural Networks Based on Caenorhabditis elegans Connectomes across Development
title_sort modeling the evolution of biological neural networks based on caenorhabditis elegans connectomes across development
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9857992/
https://www.ncbi.nlm.nih.gov/pubmed/36673192
http://dx.doi.org/10.3390/e25010051
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